Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USE1Q9NZ43 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
USE1Q9NZ43 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USE1Q9NZ43 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.13■□□□□ 0.97
USE1Q9NZ43 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USE1Q9NZ43 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
USE1Q9NZ43 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USE1Q9NZ43 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.13■□□□□ 0.97
USE1Q9NZ43 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USE1Q9NZ43 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USE1Q9NZ43 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USE1Q9NZ43 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USE1Q9NZ43 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
USE1Q9NZ43 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USE1Q9NZ43 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
USE1Q9NZ43 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USE1Q9NZ43 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.12■□□□□ 0.97
USE1Q9NZ43 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USE1Q9NZ43 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
USE1Q9NZ43 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.12■□□□□ 0.97
USE1Q9NZ43 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USE1Q9NZ43 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
USE1Q9NZ43 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
USE1Q9NZ43 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USE1Q9NZ43 AGPS-202ENST00000409888 815 ntTSL 4 BASIC21.11■□□□□ 0.97
USE1Q9NZ43 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.11■□□□□ 0.97
USE1Q9NZ43 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
USE1Q9NZ43 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.11■□□□□ 0.97
USE1Q9NZ43 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
USE1Q9NZ43 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.1■□□□□ 0.97
USE1Q9NZ43 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USE1Q9NZ43 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USE1Q9NZ43 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USE1Q9NZ43 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
USE1Q9NZ43 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
USE1Q9NZ43 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USE1Q9NZ43 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
USE1Q9NZ43 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USE1Q9NZ43 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.1■□□□□ 0.97
USE1Q9NZ43 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
USE1Q9NZ43 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
USE1Q9NZ43 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.1■□□□□ 0.97
USE1Q9NZ43 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USE1Q9NZ43 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USE1Q9NZ43 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USE1Q9NZ43 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USE1Q9NZ43 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
USE1Q9NZ43 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.09■□□□□ 0.97
USE1Q9NZ43 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USE1Q9NZ43 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USE1Q9NZ43 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USE1Q9NZ43 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USE1Q9NZ43 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.09■□□□□ 0.97
USE1Q9NZ43 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.09■□□□□ 0.97
USE1Q9NZ43 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USE1Q9NZ43 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USE1Q9NZ43 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USE1Q9NZ43 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USE1Q9NZ43 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.08■□□□□ 0.97
USE1Q9NZ43 SMPD5-203ENST00000639008 1464 ntBASIC21.08■□□□□ 0.97
USE1Q9NZ43 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USE1Q9NZ43 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USE1Q9NZ43 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
USE1Q9NZ43 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC21.08■□□□□ 0.97
USE1Q9NZ43 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.08■□□□□ 0.97
USE1Q9NZ43 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
USE1Q9NZ43 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USE1Q9NZ43 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USE1Q9NZ43 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.07■□□□□ 0.96
USE1Q9NZ43 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
USE1Q9NZ43 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.07■□□□□ 0.96
USE1Q9NZ43 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USE1Q9NZ43 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USE1Q9NZ43 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.07■□□□□ 0.96
USE1Q9NZ43 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC21.07■□□□□ 0.96
USE1Q9NZ43 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USE1Q9NZ43 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
USE1Q9NZ43 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.06■□□□□ 0.96
USE1Q9NZ43 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USE1Q9NZ43 AL161729.1-201ENST00000604104 1402 ntBASIC21.06■□□□□ 0.96
USE1Q9NZ43 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USE1Q9NZ43 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USE1Q9NZ43 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC21.06■□□□□ 0.96
USE1Q9NZ43 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.06■□□□□ 0.96
USE1Q9NZ43 MIR7108-201ENST00000614319 87 ntBASIC21.06■□□□□ 0.96
USE1Q9NZ43 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.06■□□□□ 0.96
USE1Q9NZ43 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USE1Q9NZ43 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USE1Q9NZ43 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USE1Q9NZ43 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USE1Q9NZ43 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
USE1Q9NZ43 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USE1Q9NZ43 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USE1Q9NZ43 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USE1Q9NZ43 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USE1Q9NZ43 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USE1Q9NZ43 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USE1Q9NZ43 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USE1Q9NZ43 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.04■□□□□ 0.96
USE1Q9NZ43 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms