Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.24■□□□□ 0.99
VCX3AQ9NNX9 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VCX3AQ9NNX9 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
VCX3AQ9NNX9 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
VCX3AQ9NNX9 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VCX3AQ9NNX9 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.24■□□□□ 0.99
VCX3AQ9NNX9 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VCX3AQ9NNX9 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VCX3AQ9NNX9 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VCX3AQ9NNX9 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VCX3AQ9NNX9 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VCX3AQ9NNX9 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
VCX3AQ9NNX9 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VCX3AQ9NNX9 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VCX3AQ9NNX9 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.23■□□□□ 0.99
VCX3AQ9NNX9 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.23■□□□□ 0.99
VCX3AQ9NNX9 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VCX3AQ9NNX9 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VCX3AQ9NNX9 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VCX3AQ9NNX9 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
VCX3AQ9NNX9 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VCX3AQ9NNX9 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
VCX3AQ9NNX9 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VCX3AQ9NNX9 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VCX3AQ9NNX9 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.22■□□□□ 0.99
VCX3AQ9NNX9 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
VCX3AQ9NNX9 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VCX3AQ9NNX9 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VCX3AQ9NNX9 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.22■□□□□ 0.99
VCX3AQ9NNX9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.22■□□□□ 0.99
VCX3AQ9NNX9 MIR6090-201ENST00000622481 60 ntBASIC21.22■□□□□ 0.99
VCX3AQ9NNX9 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VCX3AQ9NNX9 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
VCX3AQ9NNX9 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.22■□□□□ 0.99
VCX3AQ9NNX9 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCX3AQ9NNX9 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.21■□□□□ 0.99
VCX3AQ9NNX9 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.21■□□□□ 0.99
VCX3AQ9NNX9 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
VCX3AQ9NNX9 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCX3AQ9NNX9 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
VCX3AQ9NNX9 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCX3AQ9NNX9 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
VCX3AQ9NNX9 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VCX3AQ9NNX9 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCX3AQ9NNX9 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
VCX3AQ9NNX9 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
VCX3AQ9NNX9 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VCX3AQ9NNX9 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
VCX3AQ9NNX9 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VCX3AQ9NNX9 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VCX3AQ9NNX9 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.2■□□□□ 0.98
VCX3AQ9NNX9 CAHM-201ENST00000604200 896 ntBASIC21.2■□□□□ 0.98
VCX3AQ9NNX9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VCX3AQ9NNX9 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.2■□□□□ 0.98
VCX3AQ9NNX9 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.2■□□□□ 0.98
VCX3AQ9NNX9 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VCX3AQ9NNX9 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VCX3AQ9NNX9 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.19■□□□□ 0.98
VCX3AQ9NNX9 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
VCX3AQ9NNX9 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.19■□□□□ 0.98
VCX3AQ9NNX9 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VCX3AQ9NNX9 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.19■□□□□ 0.98
VCX3AQ9NNX9 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.19■□□□□ 0.98
VCX3AQ9NNX9 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
VCX3AQ9NNX9 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VCX3AQ9NNX9 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
VCX3AQ9NNX9 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
VCX3AQ9NNX9 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCX3AQ9NNX9 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.18■□□□□ 0.98
VCX3AQ9NNX9 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
VCX3AQ9NNX9 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
VCX3AQ9NNX9 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCX3AQ9NNX9 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCX3AQ9NNX9 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCX3AQ9NNX9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCX3AQ9NNX9 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
VCX3AQ9NNX9 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.17■□□□□ 0.98
VCX3AQ9NNX9 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VCX3AQ9NNX9 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VCX3AQ9NNX9 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VCX3AQ9NNX9 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VCX3AQ9NNX9 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.17■□□□□ 0.98
VCX3AQ9NNX9 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VCX3AQ9NNX9 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
VCX3AQ9NNX9 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VCX3AQ9NNX9 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
VCX3AQ9NNX9 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VCX3AQ9NNX9 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.17■□□□□ 0.98
VCX3AQ9NNX9 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VCX3AQ9NNX9 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.16■□□□□ 0.98
VCX3AQ9NNX9 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.16■□□□□ 0.98
VCX3AQ9NNX9 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
VCX3AQ9NNX9 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCX3AQ9NNX9 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCX3AQ9NNX9 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
VCX3AQ9NNX9 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
VCX3AQ9NNX9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCX3AQ9NNX9 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCX3AQ9NNX9 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.15■□□□□ 0.98
VCX3AQ9NNX9 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms