Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 GAK-223ENST00000628912 497 ntTSL 5 BASIC18.93■□□□□ 0.62
SSX3Q99909 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC18.93■□□□□ 0.62
SSX3Q99909 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSX3Q99909 AC142381.3-201ENST00000568208 1670 ntBASIC18.92■□□□□ 0.62
SSX3Q99909 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX3Q99909 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
SSX3Q99909 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX3Q99909 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX3Q99909 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.92■□□□□ 0.62
SSX3Q99909 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC18.92■□□□□ 0.62
SSX3Q99909 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.92■□□□□ 0.62
SSX3Q99909 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX3Q99909 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX3Q99909 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSX3Q99909 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX3Q99909 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC18.91■□□□□ 0.62
SSX3Q99909 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX3Q99909 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX3Q99909 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC18.91■□□□□ 0.62
SSX3Q99909 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSX3Q99909 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.91■□□□□ 0.62
SSX3Q99909 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.91■□□□□ 0.62
SSX3Q99909 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.91■□□□□ 0.62
SSX3Q99909 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
SSX3Q99909 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC18.91■□□□□ 0.62
SSX3Q99909 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX3Q99909 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC18.91■□□□□ 0.62
SSX3Q99909 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX3Q99909 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SSX3Q99909 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX3Q99909 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSX3Q99909 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX3Q99909 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SSX3Q99909 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSX3Q99909 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.9■□□□□ 0.62
SSX3Q99909 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.9■□□□□ 0.62
SSX3Q99909 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SSX3Q99909 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX3Q99909 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSX3Q99909 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC18.9■□□□□ 0.62
SSX3Q99909 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.89■□□□□ 0.62
SSX3Q99909 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSX3Q99909 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSX3Q99909 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.89■□□□□ 0.61
SSX3Q99909 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SSX3Q99909 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSX3Q99909 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSX3Q99909 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSX3Q99909 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SSX3Q99909 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX3Q99909 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX3Q99909 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX3Q99909 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
SSX3Q99909 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX3Q99909 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.88■□□□□ 0.61
SSX3Q99909 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.88■□□□□ 0.61
SSX3Q99909 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.88■□□□□ 0.61
SSX3Q99909 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.88■□□□□ 0.61
SSX3Q99909 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX3Q99909 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SSX3Q99909 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSX3Q99909 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSX3Q99909 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC18.88■□□□□ 0.61
SSX3Q99909 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX3Q99909 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX3Q99909 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSX3Q99909 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC18.87■□□□□ 0.61
SSX3Q99909 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSX3Q99909 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.87■□□□□ 0.61
SSX3Q99909 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SSX3Q99909 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SSX3Q99909 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SSX3Q99909 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC18.87■□□□□ 0.61
SSX3Q99909 AL024507.2-201ENST00000606070 2574 ntBASIC18.87■□□□□ 0.61
SSX3Q99909 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SSX3Q99909 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SSX3Q99909 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSX3Q99909 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SSX3Q99909 AC138932.3-201ENST00000567634 1902 ntBASIC18.86■□□□□ 0.61
SSX3Q99909 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SSX3Q99909 AC021242.3-201ENST00000607598 1377 ntBASIC18.86■□□□□ 0.61
SSX3Q99909 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SSX3Q99909 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SSX3Q99909 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SSX3Q99909 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SSX3Q99909 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
SSX3Q99909 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SSX3Q99909 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SSX3Q99909 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.85■□□□□ 0.61
SSX3Q99909 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.85■□□□□ 0.61
SSX3Q99909 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
SSX3Q99909 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SSX3Q99909 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SSX3Q99909 AL356441.2-201ENST00000443009 864 ntBASIC18.85■□□□□ 0.61
SSX3Q99909 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC18.85■□□□□ 0.61
SSX3Q99909 AC131212.1-201ENST00000613771 668 ntBASIC18.85■□□□□ 0.61
SSX3Q99909 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SSX3Q99909 AC090877.2-201ENST00000558441 1738 ntBASIC18.85■□□□□ 0.61
SSX3Q99909 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SSX3Q99909 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms