Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NKX3-1Q99801 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
NKX3-1Q99801 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NKX3-1Q99801 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NKX3-1Q99801 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.76■□□□□ 0.75
NKX3-1Q99801 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
NKX3-1Q99801 C1orf229-201ENST00000623686 2258 ntBASIC19.76■□□□□ 0.75
NKX3-1Q99801 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
NKX3-1Q99801 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
NKX3-1Q99801 KRT18P10-201ENST00000388836 1287 ntBASIC19.76■□□□□ 0.75
NKX3-1Q99801 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NKX3-1Q99801 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NKX3-1Q99801 AC090877.2-201ENST00000558441 1738 ntBASIC19.76■□□□□ 0.75
NKX3-1Q99801 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NKX3-1Q99801 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NKX3-1Q99801 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
NKX3-1Q99801 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NKX3-1Q99801 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
NKX3-1Q99801 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.75■□□□□ 0.75
NKX3-1Q99801 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
NKX3-1Q99801 AC012354.3-201ENST00000623734 483 ntBASIC19.75■□□□□ 0.75
NKX3-1Q99801 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NKX3-1Q99801 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NKX3-1Q99801 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
NKX3-1Q99801 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NKX3-1Q99801 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.74■□□□□ 0.75
NKX3-1Q99801 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NKX3-1Q99801 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.74■□□□□ 0.75
NKX3-1Q99801 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
NKX3-1Q99801 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
NKX3-1Q99801 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NKX3-1Q99801 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NKX3-1Q99801 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NKX3-1Q99801 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.75
NKX3-1Q99801 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NKX3-1Q99801 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
NKX3-1Q99801 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
NKX3-1Q99801 AC233723.2-201ENST00000623798 2106 ntBASIC19.73■□□□□ 0.75
NKX3-1Q99801 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NKX3-1Q99801 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
NKX3-1Q99801 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NKX3-1Q99801 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.73■□□□□ 0.75
NKX3-1Q99801 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
NKX3-1Q99801 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.73■□□□□ 0.75
NKX3-1Q99801 AC018755.3-202ENST00000596210 929 ntBASIC19.73■□□□□ 0.75
NKX3-1Q99801 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NKX3-1Q99801 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
NKX3-1Q99801 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NKX3-1Q99801 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.73■□□□□ 0.75
NKX3-1Q99801 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
NKX3-1Q99801 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
NKX3-1Q99801 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NKX3-1Q99801 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NKX3-1Q99801 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.72■□□□□ 0.75
NKX3-1Q99801 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
NKX3-1Q99801 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
NKX3-1Q99801 DUX4L9-201ENST00000449051 1259 ntBASIC19.72■□□□□ 0.75
NKX3-1Q99801 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.72■□□□□ 0.75
NKX3-1Q99801 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.72■□□□□ 0.75
NKX3-1Q99801 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
NKX3-1Q99801 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
NKX3-1Q99801 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
NKX3-1Q99801 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NKX3-1Q99801 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NKX3-1Q99801 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
NKX3-1Q99801 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NKX3-1Q99801 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.71■□□□□ 0.75
NKX3-1Q99801 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NKX3-1Q99801 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.71■□□□□ 0.75
NKX3-1Q99801 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NKX3-1Q99801 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NKX3-1Q99801 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.71■□□□□ 0.75
NKX3-1Q99801 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.71■□□□□ 0.75
NKX3-1Q99801 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.71■□□□□ 0.75
NKX3-1Q99801 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
NKX3-1Q99801 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.7■□□□□ 0.74
NKX3-1Q99801 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.7■□□□□ 0.74
NKX3-1Q99801 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.7■□□□□ 0.74
NKX3-1Q99801 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 CLDN5-201ENST00000403084 2357 ntBASIC19.7■□□□□ 0.74
NKX3-1Q99801 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
NKX3-1Q99801 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NKX3-1Q99801 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.69■□□□□ 0.74
NKX3-1Q99801 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
NKX3-1Q99801 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
NKX3-1Q99801 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.69■□□□□ 0.74
NKX3-1Q99801 AL117328.2-201ENST00000624617 1940 ntBASIC19.69■□□□□ 0.74
NKX3-1Q99801 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms