Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC23.74■■□□□ 1.39
RFWD3Q6PCD5 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RFWD3Q6PCD5 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
RFWD3Q6PCD5 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RFWD3Q6PCD5 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RFWD3Q6PCD5 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.73■■□□□ 1.39
RFWD3Q6PCD5 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.73■■□□□ 1.39
RFWD3Q6PCD5 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.73■■□□□ 1.39
RFWD3Q6PCD5 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
RFWD3Q6PCD5 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.73■■□□□ 1.39
RFWD3Q6PCD5 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.73■■□□□ 1.39
RFWD3Q6PCD5 MIR3621-201ENST00000580529 85 ntBASIC23.73■■□□□ 1.39
RFWD3Q6PCD5 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC23.73■■□□□ 1.39
RFWD3Q6PCD5 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
RFWD3Q6PCD5 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
RFWD3Q6PCD5 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RFWD3Q6PCD5 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
RFWD3Q6PCD5 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RFWD3Q6PCD5 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.72■■□□□ 1.39
RFWD3Q6PCD5 AK3-203ENST00000447596 705 ntTSL 2 BASIC23.72■■□□□ 1.39
RFWD3Q6PCD5 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC23.72■■□□□ 1.39
RFWD3Q6PCD5 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.72■■□□□ 1.39
RFWD3Q6PCD5 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RFWD3Q6PCD5 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RFWD3Q6PCD5 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.72■■□□□ 1.39
RFWD3Q6PCD5 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RFWD3Q6PCD5 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RFWD3Q6PCD5 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RFWD3Q6PCD5 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RFWD3Q6PCD5 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
RFWD3Q6PCD5 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
RFWD3Q6PCD5 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC23.71■■□□□ 1.39
RFWD3Q6PCD5 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.71■■□□□ 1.39
RFWD3Q6PCD5 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RFWD3Q6PCD5 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.71■■□□□ 1.39
RFWD3Q6PCD5 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.71■■□□□ 1.39
RFWD3Q6PCD5 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
RFWD3Q6PCD5 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.7■■□□□ 1.39
RFWD3Q6PCD5 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC23.7■■□□□ 1.38
RFWD3Q6PCD5 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
RFWD3Q6PCD5 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RFWD3Q6PCD5 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RFWD3Q6PCD5 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.7■■□□□ 1.38
RFWD3Q6PCD5 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.7■■□□□ 1.38
RFWD3Q6PCD5 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC23.7■■□□□ 1.38
RFWD3Q6PCD5 AL356740.2-201ENST00000601559 647 ntBASIC23.7■■□□□ 1.38
RFWD3Q6PCD5 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.7■■□□□ 1.38
RFWD3Q6PCD5 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RFWD3Q6PCD5 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RFWD3Q6PCD5 AC008406.3-201ENST00000620001 1374 ntBASIC23.69■■□□□ 1.38
RFWD3Q6PCD5 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
RFWD3Q6PCD5 AL139125.2-201ENST00000623134 1869 ntBASIC23.69■■□□□ 1.38
RFWD3Q6PCD5 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
RFWD3Q6PCD5 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC23.69■■□□□ 1.38
RFWD3Q6PCD5 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RFWD3Q6PCD5 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
RFWD3Q6PCD5 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC23.69■■□□□ 1.38
RFWD3Q6PCD5 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
RFWD3Q6PCD5 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
RFWD3Q6PCD5 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
RFWD3Q6PCD5 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RFWD3Q6PCD5 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RFWD3Q6PCD5 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.68■■□□□ 1.38
RFWD3Q6PCD5 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
RFWD3Q6PCD5 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
RFWD3Q6PCD5 AC131281.2-201ENST00000520478 145 ntBASIC23.68■■□□□ 1.38
RFWD3Q6PCD5 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
RFWD3Q6PCD5 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
RFWD3Q6PCD5 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC23.68■■□□□ 1.38
RFWD3Q6PCD5 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.67■■□□□ 1.38
RFWD3Q6PCD5 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.67■■□□□ 1.38
RFWD3Q6PCD5 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.67■■□□□ 1.38
RFWD3Q6PCD5 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
RFWD3Q6PCD5 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RFWD3Q6PCD5 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC23.67■■□□□ 1.38
RFWD3Q6PCD5 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RFWD3Q6PCD5 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RFWD3Q6PCD5 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RFWD3Q6PCD5 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
RFWD3Q6PCD5 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.67■■□□□ 1.38
RFWD3Q6PCD5 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
RFWD3Q6PCD5 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RFWD3Q6PCD5 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
RFWD3Q6PCD5 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RFWD3Q6PCD5 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RFWD3Q6PCD5 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms