Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
RNF4P78317 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF4P78317 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF4P78317 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.12■□□□□ 0.97
RNF4P78317 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF4P78317 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.12■□□□□ 0.97
RNF4P78317 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.12■□□□□ 0.97
RNF4P78317 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF4P78317 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RNF4P78317 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.12■□□□□ 0.97
RNF4P78317 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF4P78317 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF4P78317 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RNF4P78317 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.11■□□□□ 0.97
RNF4P78317 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.11■□□□□ 0.97
RNF4P78317 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.11■□□□□ 0.97
RNF4P78317 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.11■□□□□ 0.97
RNF4P78317 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RNF4P78317 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
RNF4P78317 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RNF4P78317 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
RNF4P78317 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF4P78317 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF4P78317 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
RNF4P78317 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.1■□□□□ 0.97
RNF4P78317 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF4P78317 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF4P78317 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
RNF4P78317 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.1■□□□□ 0.97
RNF4P78317 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF4P78317 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.1■□□□□ 0.97
RNF4P78317 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RNF4P78317 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.1■□□□□ 0.97
RNF4P78317 AC008406.3-201ENST00000620001 1374 ntBASIC21.1■□□□□ 0.97
RNF4P78317 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF4P78317 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNF4P78317 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNF4P78317 AC131281.2-201ENST00000520478 145 ntBASIC21.09■□□□□ 0.97
RNF4P78317 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
RNF4P78317 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNF4P78317 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.09■□□□□ 0.97
RNF4P78317 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF4P78317 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF4P78317 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
RNF4P78317 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.09■□□□□ 0.97
RNF4P78317 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RNF4P78317 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF4P78317 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RNF4P78317 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RNF4P78317 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF4P78317 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF4P78317 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RNF4P78317 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF4P78317 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
RNF4P78317 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.96
RNF4P78317 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.08■□□□□ 0.96
RNF4P78317 AC004812.2-201ENST00000611079 2094 ntBASIC21.08■□□□□ 0.96
RNF4P78317 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.08■□□□□ 0.96
RNF4P78317 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
RNF4P78317 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.08■□□□□ 0.96
RNF4P78317 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.07■□□□□ 0.96
RNF4P78317 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF4P78317 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RNF4P78317 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
RNF4P78317 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RNF4P78317 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.07■□□□□ 0.96
RNF4P78317 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.07■□□□□ 0.96
RNF4P78317 AL512631.2-201ENST00000604634 923 ntBASIC21.07■□□□□ 0.96
RNF4P78317 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.07■□□□□ 0.96
RNF4P78317 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RNF4P78317 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF4P78317 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RNF4P78317 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF4P78317 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
RNF4P78317 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RNF4P78317 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF4P78317 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF4P78317 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RNF4P78317 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
RNF4P78317 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.06■□□□□ 0.96
RNF4P78317 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.06■□□□□ 0.96
RNF4P78317 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.06■□□□□ 0.96
RNF4P78317 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
RNF4P78317 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
RNF4P78317 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.05■□□□□ 0.96
RNF4P78317 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RNF4P78317 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RNF4P78317 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF4P78317 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF4P78317 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.05■□□□□ 0.96
RNF4P78317 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RNF4P78317 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF4P78317 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF4P78317 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF4P78317 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RNF4P78317 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF4P78317 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.04■□□□□ 0.96
RNF4P78317 MIR4466-201ENST00000606121 54 ntBASIC21.04■□□□□ 0.96
RNF4P78317 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.04■□□□□ 0.96
RNF4P78317 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms