Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CDX1P47902 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX1P47902 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX1P47902 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.37■□□□□ 0.53
CDX1P47902 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CDX1P47902 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX1P47902 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC18.37■□□□□ 0.53
CDX1P47902 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDX1P47902 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX1P47902 AC010501.1-201ENST00000606270 1962 ntBASIC18.37■□□□□ 0.53
CDX1P47902 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDX1P47902 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.37■□□□□ 0.53
CDX1P47902 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX1P47902 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX1P47902 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX1P47902 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX1P47902 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX1P47902 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX1P47902 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX1P47902 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDX1P47902 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CDX1P47902 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.36■□□□□ 0.53
CDX1P47902 THA1P-201ENST00000590384 1145 ntBASIC18.36■□□□□ 0.53
CDX1P47902 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX1P47902 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CDX1P47902 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX1P47902 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.36■□□□□ 0.53
CDX1P47902 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CDX1P47902 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CDX1P47902 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.35■□□□□ 0.53
CDX1P47902 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CDX1P47902 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CDX1P47902 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC18.35■□□□□ 0.53
CDX1P47902 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDX1P47902 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.35■□□□□ 0.53
CDX1P47902 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC18.35■□□□□ 0.53
CDX1P47902 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC18.35■□□□□ 0.53
CDX1P47902 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CDX1P47902 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CDX1P47902 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDX1P47902 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDX1P47902 AC096887.2-201ENST00000623443 1957 ntBASIC18.35■□□□□ 0.53
CDX1P47902 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.35■□□□□ 0.53
CDX1P47902 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDX1P47902 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.34■□□□□ 0.53
CDX1P47902 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDX1P47902 HES6-204ENST00000409182 863 ntTSL 2 BASIC18.34■□□□□ 0.53
CDX1P47902 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.34■□□□□ 0.53
CDX1P47902 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDX1P47902 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDX1P47902 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
CDX1P47902 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDX1P47902 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDX1P47902 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDX1P47902 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC18.33■□□□□ 0.53
CDX1P47902 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDX1P47902 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDX1P47902 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDX1P47902 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.33■□□□□ 0.53
CDX1P47902 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.33■□□□□ 0.52
CDX1P47902 LINC01124-201ENST00000409786 2117 ntBASIC18.33■□□□□ 0.52
CDX1P47902 Z92544.1-202ENST00000571933 1220 ntBASIC18.33■□□□□ 0.52
CDX1P47902 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDX1P47902 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.33■□□□□ 0.52
CDX1P47902 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.33■□□□□ 0.52
CDX1P47902 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CDX1P47902 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDX1P47902 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDX1P47902 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX1P47902 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CDX1P47902 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX1P47902 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC18.32■□□□□ 0.52
CDX1P47902 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CDX1P47902 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CDX1P47902 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX1P47902 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CDX1P47902 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX1P47902 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX1P47902 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX1P47902 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CDX1P47902 AC120024.1-201ENST00000562672 995 ntBASIC18.32■□□□□ 0.52
CDX1P47902 SSSCA1-AS1-201ENST00000567594 614 ntBASIC18.32■□□□□ 0.52
CDX1P47902 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX1P47902 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX1P47902 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CDX1P47902 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CDX1P47902 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.32■□□□□ 0.52
CDX1P47902 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX1P47902 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX1P47902 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
CDX1P47902 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CDX1P47902 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX1P47902 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX1P47902 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CDX1P47902 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX1P47902 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDX1P47902 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX1P47902 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
CDX1P47902 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX1P47902 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms