Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC28.35■■■□□ 2.13
BRCA1P38398 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
BRCA1P38398 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
BRCA1P38398 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC28.34■■■□□ 2.13
BRCA1P38398 STK32C-205ENST00000456004 607 ntTSL 2 BASIC28.34■■■□□ 2.13
BRCA1P38398 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
BRCA1P38398 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
BRCA1P38398 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC28.34■■■□□ 2.13
BRCA1P38398 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
BRCA1P38398 ESRRAP2-201ENST00000418437 1549 ntBASIC28.33■■■□□ 2.13
BRCA1P38398 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
BRCA1P38398 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.12
BRCA1P38398 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
BRCA1P38398 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC28.32■■■□□ 2.12
BRCA1P38398 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC28.32■■■□□ 2.12
BRCA1P38398 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC28.32■■■□□ 2.12
BRCA1P38398 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
BRCA1P38398 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
BRCA1P38398 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
BRCA1P38398 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC28.32■■■□□ 2.12
BRCA1P38398 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC28.31■■■□□ 2.12
BRCA1P38398 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
BRCA1P38398 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC28.31■■■□□ 2.12
BRCA1P38398 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC28.31■■■□□ 2.12
BRCA1P38398 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
BRCA1P38398 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC28.3■■■□□ 2.12
BRCA1P38398 KRT18P61-201ENST00000585825 1298 ntBASIC28.3■■■□□ 2.12
BRCA1P38398 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC28.3■■■□□ 2.12
BRCA1P38398 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC28.3■■■□□ 2.12
BRCA1P38398 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
BRCA1P38398 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
BRCA1P38398 VGF-203ENST00000611537 1622 ntTSL 5 BASIC28.3■■■□□ 2.12
BRCA1P38398 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
BRCA1P38398 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC28.3■■■□□ 2.12
BRCA1P38398 GXYLT1P2-201ENST00000433312 1230 ntBASIC28.29■■■□□ 2.12
BRCA1P38398 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
BRCA1P38398 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC28.29■■■□□ 2.12
BRCA1P38398 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
BRCA1P38398 ERN1-208ENST00000606895 2068 ntBASIC28.29■■■□□ 2.12
BRCA1P38398 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC28.29■■■□□ 2.12
BRCA1P38398 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
BRCA1P38398 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
BRCA1P38398 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
BRCA1P38398 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC28.29■■■□□ 2.12
BRCA1P38398 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC28.29■■■□□ 2.12
BRCA1P38398 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
BRCA1P38398 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC28.29■■■□□ 2.12
BRCA1P38398 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC28.29■■■□□ 2.12
BRCA1P38398 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
BRCA1P38398 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
BRCA1P38398 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC28.28■■■□□ 2.12
BRCA1P38398 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
BRCA1P38398 GTSE1-AS1-202ENST00000623117 1518 ntBASIC28.28■■■□□ 2.12
BRCA1P38398 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC28.27■■■□□ 2.12
BRCA1P38398 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
BRCA1P38398 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
BRCA1P38398 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC28.27■■■□□ 2.12
BRCA1P38398 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC28.27■■■□□ 2.12
BRCA1P38398 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
BRCA1P38398 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC28.26■■■□□ 2.11
BRCA1P38398 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC28.26■■■□□ 2.11
BRCA1P38398 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
BRCA1P38398 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
BRCA1P38398 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.11
BRCA1P38398 AC073111.5-205ENST00000641717 521 ntBASIC28.26■■■□□ 2.11
BRCA1P38398 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC28.26■■■□□ 2.11
BRCA1P38398 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
BRCA1P38398 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC28.26■■■□□ 2.11
BRCA1P38398 AC104771.1-201ENST00000603335 964 ntBASIC28.25■■■□□ 2.11
BRCA1P38398 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC28.25■■■□□ 2.11
BRCA1P38398 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
BRCA1P38398 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
BRCA1P38398 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC28.24■■■□□ 2.11
BRCA1P38398 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
BRCA1P38398 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC28.24■■■□□ 2.11
BRCA1P38398 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC28.24■■■□□ 2.11
BRCA1P38398 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC28.24■■■□□ 2.11
BRCA1P38398 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC28.24■■■□□ 2.11
BRCA1P38398 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC28.24■■■□□ 2.11
BRCA1P38398 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
BRCA1P38398 AC139426.1-201ENST00000568218 2529 ntBASIC28.24■■■□□ 2.11
BRCA1P38398 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC28.23■■■□□ 2.11
BRCA1P38398 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC28.23■■■□□ 2.11
BRCA1P38398 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
BRCA1P38398 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
BRCA1P38398 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC28.23■■■□□ 2.11
BRCA1P38398 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
BRCA1P38398 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC28.22■■■□□ 2.11
BRCA1P38398 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC28.22■■■□□ 2.11
BRCA1P38398 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC28.22■■■□□ 2.11
BRCA1P38398 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
BRCA1P38398 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC28.22■■■□□ 2.11
BRCA1P38398 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
BRCA1P38398 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
BRCA1P38398 AC006015.1-201ENST00000429970 570 ntBASIC28.21■■■□□ 2.11
BRCA1P38398 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC28.21■■■□□ 2.11
BRCA1P38398 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
BRCA1P38398 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC28.21■■■□□ 2.11
BRCA1P38398 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
BRCA1P38398 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC28.21■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms