Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSX1P28360 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
MSX1P28360 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
MSX1P28360 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSX1P28360 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.85■□□□□ 0.93
MSX1P28360 AL136116.3-201ENST00000402907 1138 ntBASIC20.85■□□□□ 0.93
MSX1P28360 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.85■□□□□ 0.93
MSX1P28360 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MSX1P28360 MTDHP2-201ENST00000601468 714 ntBASIC20.85■□□□□ 0.93
MSX1P28360 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
MSX1P28360 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MSX1P28360 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
MSX1P28360 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
MSX1P28360 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MSX1P28360 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
MSX1P28360 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
MSX1P28360 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.84■□□□□ 0.93
MSX1P28360 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSX1P28360 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSX1P28360 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.84■□□□□ 0.93
MSX1P28360 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSX1P28360 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSX1P28360 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.83■□□□□ 0.93
MSX1P28360 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
MSX1P28360 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
MSX1P28360 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
MSX1P28360 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MSX1P28360 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MSX1P28360 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.83■□□□□ 0.93
MSX1P28360 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.83■□□□□ 0.93
MSX1P28360 MIR3621-201ENST00000580529 85 ntBASIC20.83■□□□□ 0.93
MSX1P28360 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.83■□□□□ 0.93
MSX1P28360 MIR6724-1-201ENST00000616420 92 ntBASIC20.83■□□□□ 0.93
MSX1P28360 MIR6724-2-201ENST00000616483 92 ntBASIC20.83■□□□□ 0.93
MSX1P28360 MIR6724-4-201ENST00000617390 92 ntBASIC20.83■□□□□ 0.93
MSX1P28360 MIR6724-3-201ENST00000622482 92 ntBASIC20.83■□□□□ 0.93
MSX1P28360 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
MSX1P28360 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.83■□□□□ 0.92
MSX1P28360 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSX1P28360 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
MSX1P28360 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSX1P28360 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
MSX1P28360 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.82■□□□□ 0.92
MSX1P28360 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX1P28360 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX1P28360 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
MSX1P28360 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX1P28360 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX1P28360 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.82■□□□□ 0.92
MSX1P28360 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX1P28360 ALDH1A3-203ENST00000557963 1670 ntBASIC20.82■□□□□ 0.92
MSX1P28360 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSX1P28360 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
MSX1P28360 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSX1P28360 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.81■□□□□ 0.92
MSX1P28360 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.81■□□□□ 0.92
MSX1P28360 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.81■□□□□ 0.92
MSX1P28360 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSX1P28360 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.81■□□□□ 0.92
MSX1P28360 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.81■□□□□ 0.92
MSX1P28360 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSX1P28360 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSX1P28360 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.8■□□□□ 0.92
MSX1P28360 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
MSX1P28360 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSX1P28360 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSX1P28360 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.8■□□□□ 0.92
MSX1P28360 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSX1P28360 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSX1P28360 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSX1P28360 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSX1P28360 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSX1P28360 AC004812.2-201ENST00000611079 2094 ntBASIC20.79■□□□□ 0.92
MSX1P28360 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MSX1P28360 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MSX1P28360 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.79■□□□□ 0.92
MSX1P28360 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MSX1P28360 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
MSX1P28360 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.79■□□□□ 0.92
MSX1P28360 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MSX1P28360 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSX1P28360 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSX1P28360 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSX1P28360 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSX1P28360 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
MSX1P28360 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
MSX1P28360 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSX1P28360 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSX1P28360 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSX1P28360 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSX1P28360 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSX1P28360 AL356740.2-201ENST00000601559 647 ntBASIC20.78■□□□□ 0.92
MSX1P28360 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSX1P28360 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSX1P28360 AC005703.6-201ENST00000623265 1329 ntBASIC20.78■□□□□ 0.92
MSX1P28360 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSX1P28360 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MSX1P28360 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSX1P28360 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.77■□□□□ 0.92
MSX1P28360 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms