Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC17.3■□□□□ 0.36
HLA-DMBP28068 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
HLA-DMBP28068 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DMBP28068 EI24-213ENST00000618552 1747 ntTSL 5 BASIC17.3■□□□□ 0.36
HLA-DMBP28068 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DMBP28068 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DMBP28068 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DMBP28068 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC17.3■□□□□ 0.36
HLA-DMBP28068 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC17.29■□□□□ 0.36
HLA-DMBP28068 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DMBP28068 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
HLA-DMBP28068 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DMBP28068 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DMBP28068 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DMBP28068 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
HLA-DMBP28068 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DMBP28068 RARRES2P1-201ENST00000474487 481 ntBASIC17.29■□□□□ 0.36
HLA-DMBP28068 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DMBP28068 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DMBP28068 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DMBP28068 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DMBP28068 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC17.28■□□□□ 0.36
HLA-DMBP28068 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DMBP28068 ANOS2P-203ENST00000472227 1816 ntBASIC17.28■□□□□ 0.36
HLA-DMBP28068 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC17.28■□□□□ 0.36
HLA-DMBP28068 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DMBP28068 CD37-213ENST00000598095 1598 ntTSL 2 BASIC17.28■□□□□ 0.36
HLA-DMBP28068 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DMBP28068 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC17.28■□□□□ 0.36
HLA-DMBP28068 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DMBP28068 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
HLA-DMBP28068 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DMBP28068 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DMBP28068 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC17.28■□□□□ 0.36
HLA-DMBP28068 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DMBP28068 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DMBP28068 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC17.28■□□□□ 0.36
HLA-DMBP28068 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DMBP28068 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC17.28■□□□□ 0.36
HLA-DMBP28068 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HLA-DMBP28068 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HLA-DMBP28068 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC17.27■□□□□ 0.36
HLA-DMBP28068 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC17.27■□□□□ 0.36
HLA-DMBP28068 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC17.27■□□□□ 0.36
HLA-DMBP28068 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HLA-DMBP28068 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC17.27■□□□□ 0.36
HLA-DMBP28068 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC17.27■□□□□ 0.36
HLA-DMBP28068 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
HLA-DMBP28068 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
HLA-DMBP28068 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC17.27■□□□□ 0.35
HLA-DMBP28068 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
HLA-DMBP28068 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.27■□□□□ 0.35
HLA-DMBP28068 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
HLA-DMBP28068 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
HLA-DMBP28068 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DMBP28068 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DMBP28068 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DMBP28068 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DMBP28068 AC010980.1-201ENST00000587192 1142 ntBASIC17.26■□□□□ 0.35
HLA-DMBP28068 AC074183.2-201ENST00000623112 922 ntBASIC17.26■□□□□ 0.35
HLA-DMBP28068 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DMBP28068 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC17.26■□□□□ 0.35
HLA-DMBP28068 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC17.26■□□□□ 0.35
HLA-DMBP28068 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DMBP28068 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DMBP28068 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DMBP28068 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
HLA-DMBP28068 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DMBP28068 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DMBP28068 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DMBP28068 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
HLA-DMBP28068 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DMBP28068 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DMBP28068 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC17.25■□□□□ 0.35
HLA-DMBP28068 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC17.25■□□□□ 0.35
HLA-DMBP28068 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DMBP28068 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DMBP28068 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DMBP28068 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC17.24■□□□□ 0.35
HLA-DMBP28068 GALC-202ENST00000393568 2054 ntTSL 2 BASIC17.24■□□□□ 0.35
HLA-DMBP28068 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
HLA-DMBP28068 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC17.24■□□□□ 0.35
HLA-DMBP28068 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DMBP28068 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DMBP28068 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DMBP28068 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DMBP28068 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DMBP28068 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
HLA-DMBP28068 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC17.23■□□□□ 0.35
HLA-DMBP28068 AC131274.2-201ENST00000580697 1507 ntBASIC17.23■□□□□ 0.35
HLA-DMBP28068 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.23■□□□□ 0.35
HLA-DMBP28068 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HLA-DMBP28068 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DMBP28068 AL022069.1-201ENST00000568025 1636 ntBASIC17.23■□□□□ 0.35
HLA-DMBP28068 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DMBP28068 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC17.23■□□□□ 0.35
HLA-DMBP28068 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DMBP28068 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DMBP28068 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DMBP28068 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms