Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
XRCC1P18887 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.66■■□□□ 1.22
XRCC1P18887 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
XRCC1P18887 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
XRCC1P18887 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
XRCC1P18887 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.65■■□□□ 1.22
XRCC1P18887 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC22.65■■□□□ 1.22
XRCC1P18887 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
XRCC1P18887 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC22.65■■□□□ 1.22
XRCC1P18887 MIR6089-201ENST00000616698 64 ntBASIC22.65■■□□□ 1.22
XRCC1P18887 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC22.65■■□□□ 1.22
XRCC1P18887 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.65■■□□□ 1.22
XRCC1P18887 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.65■■□□□ 1.22
XRCC1P18887 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
XRCC1P18887 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
XRCC1P18887 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
XRCC1P18887 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
XRCC1P18887 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
XRCC1P18887 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.64■■□□□ 1.21
XRCC1P18887 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
XRCC1P18887 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
XRCC1P18887 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
XRCC1P18887 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.64■■□□□ 1.21
XRCC1P18887 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
XRCC1P18887 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
XRCC1P18887 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.63■■□□□ 1.21
XRCC1P18887 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
XRCC1P18887 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.63■■□□□ 1.21
XRCC1P18887 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.63■■□□□ 1.21
XRCC1P18887 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
XRCC1P18887 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22.63■■□□□ 1.21
XRCC1P18887 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22.63■■□□□ 1.21
XRCC1P18887 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22.63■■□□□ 1.21
XRCC1P18887 AC010997.5-201ENST00000609182 354 ntBASIC22.63■■□□□ 1.21
XRCC1P18887 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.63■■□□□ 1.21
XRCC1P18887 DUSP8P5-201ENST00000422884 1815 ntBASIC22.63■■□□□ 1.21
XRCC1P18887 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
XRCC1P18887 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
XRCC1P18887 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
XRCC1P18887 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.62■■□□□ 1.21
XRCC1P18887 MTDHP2-201ENST00000601468 714 ntBASIC22.62■■□□□ 1.21
XRCC1P18887 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
XRCC1P18887 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.62■■□□□ 1.21
XRCC1P18887 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC22.61■■□□□ 1.21
XRCC1P18887 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.61■■□□□ 1.21
XRCC1P18887 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC22.61■■□□□ 1.21
XRCC1P18887 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC22.61■■□□□ 1.21
XRCC1P18887 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC22.61■■□□□ 1.21
XRCC1P18887 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.61■■□□□ 1.21
XRCC1P18887 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.6■■□□□ 1.21
XRCC1P18887 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
XRCC1P18887 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
XRCC1P18887 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC22.6■■□□□ 1.21
XRCC1P18887 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
XRCC1P18887 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
XRCC1P18887 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.6■■□□□ 1.21
XRCC1P18887 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
XRCC1P18887 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
XRCC1P18887 SNX5-217ENST00000606557 1087 ntBASIC22.59■■□□□ 1.21
XRCC1P18887 EXOG-217ENST00000630638 197 ntTSL 5 BASIC22.59■■□□□ 1.21
XRCC1P18887 AC141586.4-201ENST00000624558 1573 ntBASIC22.59■■□□□ 1.21
XRCC1P18887 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
XRCC1P18887 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
XRCC1P18887 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
XRCC1P18887 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
XRCC1P18887 MIR6724-1-201ENST00000616420 92 ntBASIC22.58■■□□□ 1.21
XRCC1P18887 MIR6724-2-201ENST00000616483 92 ntBASIC22.58■■□□□ 1.21
XRCC1P18887 MIR6724-4-201ENST00000617390 92 ntBASIC22.58■■□□□ 1.21
XRCC1P18887 MIR6724-3-201ENST00000622482 92 ntBASIC22.58■■□□□ 1.21
XRCC1P18887 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.58■■□□□ 1.21
XRCC1P18887 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.58■■□□□ 1.21
XRCC1P18887 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.58■■□□□ 1.21
XRCC1P18887 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
XRCC1P18887 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.57■■□□□ 1.2
XRCC1P18887 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.57■■□□□ 1.2
XRCC1P18887 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.57■■□□□ 1.2
XRCC1P18887 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
XRCC1P18887 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.57■■□□□ 1.2
XRCC1P18887 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
XRCC1P18887 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
XRCC1P18887 LSM7-203ENST00000585409 512 ntTSL 2 BASIC22.57■■□□□ 1.2
XRCC1P18887 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
XRCC1P18887 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
XRCC1P18887 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.57■■□□□ 1.2
XRCC1P18887 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.56■■□□□ 1.2
XRCC1P18887 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.56■■□□□ 1.2
XRCC1P18887 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
XRCC1P18887 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.56■■□□□ 1.2
XRCC1P18887 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.56■■□□□ 1.2
XRCC1P18887 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC22.56■■□□□ 1.2
XRCC1P18887 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC22.56■■□□□ 1.2
XRCC1P18887 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
XRCC1P18887 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
XRCC1P18887 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
XRCC1P18887 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
XRCC1P18887 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
XRCC1P18887 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.55■■□□□ 1.2
XRCC1P18887 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
XRCC1P18887 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
XRCC1P18887 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms