Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SYT6-210ENST00000641643 1587 ntBASIC22.36■■□□□ 1.17
TNFP01375 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.36■■□□□ 1.17
TNFP01375 AC142381.3-201ENST00000568208 1670 ntBASIC22.36■■□□□ 1.17
TNFP01375 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TNFP01375 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22.35■■□□□ 1.17
TNFP01375 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.35■■□□□ 1.17
TNFP01375 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.35■■□□□ 1.17
TNFP01375 AC024257.2-201ENST00000549699 147 ntBASIC22.35■■□□□ 1.17
TNFP01375 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.35■■□□□ 1.17
TNFP01375 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.35■■□□□ 1.17
TNFP01375 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TNFP01375 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TNFP01375 ALDH1A3-203ENST00000557963 1670 ntBASIC22.35■■□□□ 1.17
TNFP01375 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TNFP01375 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TNFP01375 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TNFP01375 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.34■■□□□ 1.17
TNFP01375 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TNFP01375 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
TNFP01375 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.34■■□□□ 1.17
TNFP01375 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
TNFP01375 AC099791.2-201ENST00000605725 427 ntBASIC22.34■■□□□ 1.17
TNFP01375 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.34■■□□□ 1.17
TNFP01375 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TNFP01375 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TNFP01375 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
TNFP01375 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TNFP01375 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.33■■□□□ 1.17
TNFP01375 AC142381.2-201ENST00000566120 298 ntBASIC22.33■■□□□ 1.17
TNFP01375 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
TNFP01375 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC22.32■■□□□ 1.16
TNFP01375 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TNFP01375 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TNFP01375 MIR935-201ENST00000401179 91 ntBASIC22.32■■□□□ 1.16
TNFP01375 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TNFP01375 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.32■■□□□ 1.16
TNFP01375 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TNFP01375 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.31■■□□□ 1.16
TNFP01375 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TNFP01375 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
TNFP01375 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TNFP01375 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.31■■□□□ 1.16
TNFP01375 AC138932.3-201ENST00000567634 1902 ntBASIC22.31■■□□□ 1.16
TNFP01375 C17orf82-201ENST00000623772 1530 ntBASIC22.31■■□□□ 1.16
TNFP01375 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TNFP01375 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TNFP01375 MED17-227ENST00000640521 2047 ntTSL 5 BASIC22.3■■□□□ 1.16
TNFP01375 EDA-201ENST00000338901 1233 ntBASIC22.3■■□□□ 1.16
TNFP01375 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC22.3■■□□□ 1.16
TNFP01375 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.3■■□□□ 1.16
TNFP01375 AC241377.3-202ENST00000626088 1088 ntBASIC22.3■■□□□ 1.16
TNFP01375 AC241585.3-202ENST00000628937 1088 ntBASIC22.3■■□□□ 1.16
TNFP01375 AC245100.8-202ENST00000629247 1058 ntBASIC22.3■■□□□ 1.16
TNFP01375 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TNFP01375 AC135731.1-201ENST00000569415 2548 ntBASIC22.3■■□□□ 1.16
TNFP01375 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TNFP01375 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TNFP01375 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.29■■□□□ 1.16
TNFP01375 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TNFP01375 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TNFP01375 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC22.29■■□□□ 1.16
TNFP01375 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TNFP01375 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.29■■□□□ 1.16
TNFP01375 AL355001.2-201ENST00000620617 1191 ntBASIC22.29■■□□□ 1.16
TNFP01375 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC22.29■■□□□ 1.16
TNFP01375 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TNFP01375 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TNFP01375 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.28■■□□□ 1.16
TNFP01375 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.28■■□□□ 1.16
TNFP01375 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
TNFP01375 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TNFP01375 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TNFP01375 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TNFP01375 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.28■■□□□ 1.16
TNFP01375 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
TNFP01375 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.28■■□□□ 1.16
TNFP01375 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC22.27■■□□□ 1.16
TNFP01375 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TNFP01375 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TNFP01375 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TNFP01375 SERBP1P1-201ENST00000396021 1160 ntBASIC22.27■■□□□ 1.16
TNFP01375 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TNFP01375 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
TNFP01375 SUDS3P1-201ENST00000505831 966 ntBASIC22.27■■□□□ 1.16
TNFP01375 AL031432.3-201ENST00000607698 485 ntBASIC22.27■■□□□ 1.16
TNFP01375 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.27■■□□□ 1.16
TNFP01375 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TNFP01375 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC22.27■■□□□ 1.16
TNFP01375 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
TNFP01375 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
TNFP01375 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
TNFP01375 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TNFP01375 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TNFP01375 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TNFP01375 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TNFP01375 EBPL-204ENST00000378272 766 ntTSL 3 BASIC22.26■■□□□ 1.15
TNFP01375 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.26■■□□□ 1.15
TNFP01375 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TNFP01375 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC22.26■■□□□ 1.15
TNFP01375 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms