Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
UPK3AO75631 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.4■□□□□ 0.86
UPK3AO75631 AC021242.3-201ENST00000607598 1377 ntBASIC20.4■□□□□ 0.86
UPK3AO75631 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.39■□□□□ 0.86
UPK3AO75631 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
UPK3AO75631 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
UPK3AO75631 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
UPK3AO75631 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
UPK3AO75631 AC131274.2-201ENST00000580697 1507 ntBASIC20.39■□□□□ 0.85
UPK3AO75631 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.39■□□□□ 0.85
UPK3AO75631 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
UPK3AO75631 Z92544.1-202ENST00000571933 1220 ntBASIC20.39■□□□□ 0.85
UPK3AO75631 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.39■□□□□ 0.85
UPK3AO75631 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
UPK3AO75631 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
UPK3AO75631 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
UPK3AO75631 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
UPK3AO75631 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
UPK3AO75631 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
UPK3AO75631 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
UPK3AO75631 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
UPK3AO75631 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
UPK3AO75631 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
UPK3AO75631 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.38■□□□□ 0.85
UPK3AO75631 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
UPK3AO75631 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
UPK3AO75631 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
UPK3AO75631 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.38■□□□□ 0.85
UPK3AO75631 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.37■□□□□ 0.85
UPK3AO75631 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
UPK3AO75631 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
UPK3AO75631 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.37■□□□□ 0.85
UPK3AO75631 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
UPK3AO75631 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
UPK3AO75631 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
UPK3AO75631 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.37■□□□□ 0.85
UPK3AO75631 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.37■□□□□ 0.85
UPK3AO75631 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.37■□□□□ 0.85
UPK3AO75631 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.37■□□□□ 0.85
UPK3AO75631 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
UPK3AO75631 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
UPK3AO75631 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
UPK3AO75631 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.36■□□□□ 0.85
UPK3AO75631 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
UPK3AO75631 AL022069.1-201ENST00000568025 1636 ntBASIC20.36■□□□□ 0.85
UPK3AO75631 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.36■□□□□ 0.85
UPK3AO75631 KRT125P-201ENST00000546827 989 ntBASIC20.36■□□□□ 0.85
UPK3AO75631 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
UPK3AO75631 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
UPK3AO75631 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
UPK3AO75631 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
UPK3AO75631 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
UPK3AO75631 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
UPK3AO75631 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UPK3AO75631 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
UPK3AO75631 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
UPK3AO75631 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.34■□□□□ 0.85
UPK3AO75631 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UPK3AO75631 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.34■□□□□ 0.85
UPK3AO75631 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
UPK3AO75631 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
UPK3AO75631 MIR4787-201ENST00000607364 84 ntBASIC20.34■□□□□ 0.85
UPK3AO75631 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UPK3AO75631 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.34■□□□□ 0.85
UPK3AO75631 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UPK3AO75631 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
UPK3AO75631 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.34■□□□□ 0.85
UPK3AO75631 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
UPK3AO75631 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
UPK3AO75631 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.33■□□□□ 0.85
UPK3AO75631 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
UPK3AO75631 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.33■□□□□ 0.85
UPK3AO75631 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.33■□□□□ 0.85
UPK3AO75631 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
UPK3AO75631 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.33■□□□□ 0.85
UPK3AO75631 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.33■□□□□ 0.85
UPK3AO75631 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.33■□□□□ 0.85
UPK3AO75631 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
UPK3AO75631 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
UPK3AO75631 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
UPK3AO75631 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
UPK3AO75631 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.33■□□□□ 0.84
UPK3AO75631 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.33■□□□□ 0.84
UPK3AO75631 C9orf163-202ENST00000624034 2573 ntBASIC20.33■□□□□ 0.84
UPK3AO75631 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
UPK3AO75631 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
UPK3AO75631 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
UPK3AO75631 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
UPK3AO75631 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.32■□□□□ 0.84
UPK3AO75631 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
UPK3AO75631 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.32■□□□□ 0.84
UPK3AO75631 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.32■□□□□ 0.84
UPK3AO75631 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
UPK3AO75631 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
UPK3AO75631 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.31■□□□□ 0.84
UPK3AO75631 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.31■□□□□ 0.84
UPK3AO75631 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.31■□□□□ 0.84
UPK3AO75631 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
UPK3AO75631 AC004448.1-201ENST00000458332 883 ntBASIC20.31■□□□□ 0.84
UPK3AO75631 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms