Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC29.51■■■□□ 2.31
PTCD1O75127 PLD4-205ENST00000553861 667 ntTSL 2 BASIC29.51■■■□□ 2.31
PTCD1O75127 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC29.51■■■□□ 2.31
PTCD1O75127 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
PTCD1O75127 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
PTCD1O75127 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC29.51■■■□□ 2.31
PTCD1O75127 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
PTCD1O75127 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
PTCD1O75127 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC29.5■■■□□ 2.31
PTCD1O75127 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
PTCD1O75127 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
PTCD1O75127 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC29.5■■■□□ 2.31
PTCD1O75127 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
PTCD1O75127 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC29.49■■■□□ 2.31
PTCD1O75127 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
PTCD1O75127 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
PTCD1O75127 AC241377.3-202ENST00000626088 1088 ntBASIC29.49■■■□□ 2.31
PTCD1O75127 AC241585.3-202ENST00000628937 1088 ntBASIC29.49■■■□□ 2.31
PTCD1O75127 AC245100.8-202ENST00000629247 1058 ntBASIC29.49■■■□□ 2.31
PTCD1O75127 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC29.49■■■□□ 2.31
PTCD1O75127 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
PTCD1O75127 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC29.49■■■□□ 2.31
PTCD1O75127 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
PTCD1O75127 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC29.48■■■□□ 2.31
PTCD1O75127 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
PTCD1O75127 IRS3P-201ENST00000223076 1006 ntBASIC29.48■■■□□ 2.31
PTCD1O75127 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
PTCD1O75127 AL162430.1-201ENST00000480705 870 ntBASIC29.48■■■□□ 2.31
PTCD1O75127 RHOF-204ENST00000537265 699 ntTSL 2 BASIC29.48■■■□□ 2.31
PTCD1O75127 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC29.48■■■□□ 2.31
PTCD1O75127 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC29.48■■■□□ 2.31
PTCD1O75127 AC136469.2-201ENST00000623944 1028 ntBASIC29.48■■■□□ 2.31
PTCD1O75127 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC29.48■■■□□ 2.31
PTCD1O75127 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PTCD1O75127 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PTCD1O75127 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
PTCD1O75127 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC29.47■■■□□ 2.31
PTCD1O75127 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC29.47■■■□□ 2.31
PTCD1O75127 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PTCD1O75127 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PTCD1O75127 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
PTCD1O75127 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
PTCD1O75127 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC29.47■■■□□ 2.31
PTCD1O75127 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC29.47■■■□□ 2.31
PTCD1O75127 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
PTCD1O75127 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC29.46■■■□□ 2.31
PTCD1O75127 MIR3181-201ENST00000578512 73 ntBASIC29.46■■■□□ 2.31
PTCD1O75127 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
PTCD1O75127 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC29.45■■■□□ 2.31
PTCD1O75127 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
PTCD1O75127 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC29.45■■■□□ 2.31
PTCD1O75127 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC29.45■■■□□ 2.31
PTCD1O75127 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
PTCD1O75127 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
PTCD1O75127 JTB-203ENST00000368589 1216 ntTSL 2 BASIC29.45■■■□□ 2.31
PTCD1O75127 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC29.45■■■□□ 2.31
PTCD1O75127 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC29.45■■■□□ 2.31
PTCD1O75127 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
PTCD1O75127 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
PTCD1O75127 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC29.45■■■□□ 2.3
PTCD1O75127 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC29.45■■■□□ 2.3
PTCD1O75127 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
PTCD1O75127 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
PTCD1O75127 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
PTCD1O75127 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC29.44■■■□□ 2.3
PTCD1O75127 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC29.44■■■□□ 2.3
PTCD1O75127 NKILA-201ENST00000613231 537 ntTSL 4 BASIC29.44■■■□□ 2.3
PTCD1O75127 AC009086.3-201ENST00000623486 1008 ntBASIC29.44■■■□□ 2.3
PTCD1O75127 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC29.44■■■□□ 2.3
PTCD1O75127 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC29.43■■■□□ 2.3
PTCD1O75127 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC29.43■■■□□ 2.3
PTCD1O75127 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC29.43■■■□□ 2.3
PTCD1O75127 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC29.43■■■□□ 2.3
PTCD1O75127 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC29.43■■■□□ 2.3
PTCD1O75127 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC29.43■■■□□ 2.3
PTCD1O75127 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
PTCD1O75127 AC145676.1-201ENST00000514988 2004 ntBASIC29.42■■■□□ 2.3
PTCD1O75127 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC29.42■■■□□ 2.3
PTCD1O75127 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC29.42■■■□□ 2.3
PTCD1O75127 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
PTCD1O75127 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC29.42■■■□□ 2.3
PTCD1O75127 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC29.42■■■□□ 2.3
PTCD1O75127 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
PTCD1O75127 USF2-207ENST00000595068 1612 ntTSL 5 BASIC29.42■■■□□ 2.3
PTCD1O75127 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC29.41■■■□□ 2.3
PTCD1O75127 AC233992.3-201ENST00000607491 485 ntBASIC29.41■■■□□ 2.3
PTCD1O75127 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
PTCD1O75127 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
PTCD1O75127 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
PTCD1O75127 HLA-L-211ENST00000482052 1765 ntBASIC29.4■■■□□ 2.3
PTCD1O75127 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
PTCD1O75127 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC29.4■■■□□ 2.3
PTCD1O75127 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC29.4■■■□□ 2.3
PTCD1O75127 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC29.4■■■□□ 2.3
PTCD1O75127 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC29.4■■■□□ 2.3
PTCD1O75127 VGF-203ENST00000611537 1622 ntTSL 5 BASIC29.39■■■□□ 2.3
PTCD1O75127 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
PTCD1O75127 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC29.39■■■□□ 2.3
PTCD1O75127 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC29.39■■■□□ 2.3
PTCD1O75127 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC29.39■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms