Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LMX1BO60663 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
LMX1BO60663 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20■□□□□ 0.79
LMX1BO60663 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20■□□□□ 0.79
LMX1BO60663 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
LMX1BO60663 AC012676.1-201ENST00000574705 1949 ntBASIC20■□□□□ 0.79
LMX1BO60663 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20■□□□□ 0.79
LMX1BO60663 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20■□□□□ 0.79
LMX1BO60663 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
LMX1BO60663 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1BO60663 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
LMX1BO60663 LONRF2P2-201ENST00000439212 571 ntBASIC19.99■□□□□ 0.79
LMX1BO60663 KRT125P-201ENST00000546827 989 ntBASIC19.99■□□□□ 0.79
LMX1BO60663 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.99■□□□□ 0.79
LMX1BO60663 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1BO60663 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
LMX1BO60663 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1BO60663 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1BO60663 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1BO60663 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LMX1BO60663 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LMX1BO60663 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.98■□□□□ 0.79
LMX1BO60663 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
LMX1BO60663 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.98■□□□□ 0.79
LMX1BO60663 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.98■□□□□ 0.79
LMX1BO60663 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LMX1BO60663 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.98■□□□□ 0.79
LMX1BO60663 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.98■□□□□ 0.79
LMX1BO60663 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LMX1BO60663 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC19.98■□□□□ 0.79
LMX1BO60663 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LMX1BO60663 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
LMX1BO60663 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.98■□□□□ 0.79
LMX1BO60663 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LMX1BO60663 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1BO60663 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1BO60663 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1BO60663 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.97■□□□□ 0.79
LMX1BO60663 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.97■□□□□ 0.79
LMX1BO60663 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1BO60663 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1BO60663 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1BO60663 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1BO60663 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1BO60663 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1BO60663 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1BO60663 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1BO60663 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1BO60663 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.96■□□□□ 0.79
LMX1BO60663 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.96■□□□□ 0.79
LMX1BO60663 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.96■□□□□ 0.79
LMX1BO60663 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1BO60663 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
LMX1BO60663 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1BO60663 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.96■□□□□ 0.79
LMX1BO60663 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.96■□□□□ 0.79
LMX1BO60663 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LMX1BO60663 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LMX1BO60663 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
LMX1BO60663 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
LMX1BO60663 BX664725.1-201ENST00000438252 379 ntBASIC19.95■□□□□ 0.78
LMX1BO60663 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.95■□□□□ 0.78
LMX1BO60663 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LMX1BO60663 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
LMX1BO60663 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LMX1BO60663 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LMX1BO60663 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.95■□□□□ 0.78
LMX1BO60663 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LMX1BO60663 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LMX1BO60663 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
LMX1BO60663 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
LMX1BO60663 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1BO60663 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1BO60663 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1BO60663 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1BO60663 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1BO60663 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1BO60663 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1BO60663 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1BO60663 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
LMX1BO60663 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1BO60663 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1BO60663 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
LMX1BO60663 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1BO60663 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1BO60663 MIR4787-201ENST00000607364 84 ntBASIC19.93■□□□□ 0.78
LMX1BO60663 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1BO60663 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
LMX1BO60663 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
LMX1BO60663 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
LMX1BO60663 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
LMX1BO60663 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1BO60663 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1BO60663 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LMX1BO60663 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.92■□□□□ 0.78
LMX1BO60663 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
LMX1BO60663 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.92■□□□□ 0.78
LMX1BO60663 AC022616.5-201ENST00000518796 181 ntBASIC19.92■□□□□ 0.78
LMX1BO60663 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.92■□□□□ 0.78
LMX1BO60663 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms