Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 GRAMD4P2-201ENST00000423297 1097 ntBASIC28.73■■■□□ 2.19
NPHP1O15259 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC28.73■■■□□ 2.19
NPHP1O15259 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC28.73■■■□□ 2.19
NPHP1O15259 C17orf82-201ENST00000623772 1530 ntBASIC28.73■■■□□ 2.19
NPHP1O15259 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
NPHP1O15259 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
NPHP1O15259 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
NPHP1O15259 AC009086.3-201ENST00000623486 1008 ntBASIC28.72■■■□□ 2.19
NPHP1O15259 AC136469.2-201ENST00000623944 1028 ntBASIC28.72■■■□□ 2.19
NPHP1O15259 SLC6A10P-202ENST00000431994 2058 ntBASIC28.71■■■□□ 2.19
NPHP1O15259 JTB-203ENST00000368589 1216 ntTSL 2 BASIC28.71■■■□□ 2.19
NPHP1O15259 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC28.71■■■□□ 2.19
NPHP1O15259 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC28.71■■■□□ 2.19
NPHP1O15259 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC28.71■■■□□ 2.19
NPHP1O15259 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC28.7■■■□□ 2.19
NPHP1O15259 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
NPHP1O15259 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
NPHP1O15259 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC28.7■■■□□ 2.18
NPHP1O15259 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC28.7■■■□□ 2.18
NPHP1O15259 AC006455.2-201ENST00000429931 906 ntBASIC28.7■■■□□ 2.18
NPHP1O15259 AC233992.3-201ENST00000607491 485 ntBASIC28.7■■■□□ 2.18
NPHP1O15259 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC28.7■■■□□ 2.18
NPHP1O15259 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC28.7■■■□□ 2.18
NPHP1O15259 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
NPHP1O15259 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
NPHP1O15259 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC28.69■■■□□ 2.18
NPHP1O15259 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
NPHP1O15259 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
NPHP1O15259 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
NPHP1O15259 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC28.68■■■□□ 2.18
NPHP1O15259 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC28.68■■■□□ 2.18
NPHP1O15259 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
NPHP1O15259 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC28.68■■■□□ 2.18
NPHP1O15259 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
NPHP1O15259 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
NPHP1O15259 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC28.67■■■□□ 2.18
NPHP1O15259 SP2-202ENST00000613139 908 ntTSL 5 BASIC28.67■■■□□ 2.18
NPHP1O15259 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC28.67■■■□□ 2.18
NPHP1O15259 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
NPHP1O15259 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
NPHP1O15259 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC28.67■■■□□ 2.18
NPHP1O15259 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC28.66■■■□□ 2.18
NPHP1O15259 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC28.66■■■□□ 2.18
NPHP1O15259 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC28.66■■■□□ 2.18
NPHP1O15259 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
NPHP1O15259 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC28.66■■■□□ 2.18
NPHP1O15259 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
NPHP1O15259 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
NPHP1O15259 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
NPHP1O15259 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
NPHP1O15259 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC28.65■■■□□ 2.18
NPHP1O15259 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
NPHP1O15259 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
NPHP1O15259 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
NPHP1O15259 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
NPHP1O15259 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC28.64■■■□□ 2.18
NPHP1O15259 BX842568.3-201ENST00000418104 571 ntBASIC28.64■■■□□ 2.18
NPHP1O15259 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
NPHP1O15259 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
NPHP1O15259 MIR3181-201ENST00000578512 73 ntBASIC28.64■■■□□ 2.18
NPHP1O15259 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
NPHP1O15259 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
NPHP1O15259 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
NPHP1O15259 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC28.64■■■□□ 2.17
NPHP1O15259 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC28.63■■■□□ 2.17
NPHP1O15259 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
NPHP1O15259 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC28.63■■■□□ 2.17
NPHP1O15259 AC126544.1-201ENST00000580842 1059 ntBASIC28.63■■■□□ 2.17
NPHP1O15259 MPST-208ENST00000628507 698 ntTSL 5 BASIC28.63■■■□□ 2.17
NPHP1O15259 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC28.63■■■□□ 2.17
NPHP1O15259 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
NPHP1O15259 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC28.62■■■□□ 2.17
NPHP1O15259 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
NPHP1O15259 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
NPHP1O15259 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
NPHP1O15259 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
NPHP1O15259 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC28.62■■■□□ 2.17
NPHP1O15259 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
NPHP1O15259 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC28.62■■■□□ 2.17
NPHP1O15259 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC28.61■■■□□ 2.17
NPHP1O15259 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC28.61■■■□□ 2.17
NPHP1O15259 CEBPA-AS1-201ENST00000592982 2198 ntBASIC28.61■■■□□ 2.17
NPHP1O15259 AK1-201ENST00000223836 736 ntTSL 3 BASIC28.61■■■□□ 2.17
NPHP1O15259 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC28.61■■■□□ 2.17
NPHP1O15259 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC28.61■■■□□ 2.17
NPHP1O15259 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC28.61■■■□□ 2.17
NPHP1O15259 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC28.61■■■□□ 2.17
NPHP1O15259 NKILA-201ENST00000613231 537 ntTSL 4 BASIC28.61■■■□□ 2.17
NPHP1O15259 MIR6089-201ENST00000616698 64 ntBASIC28.61■■■□□ 2.17
NPHP1O15259 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.17
NPHP1O15259 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC28.6■■■□□ 2.17
NPHP1O15259 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC28.6■■■□□ 2.17
NPHP1O15259 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
NPHP1O15259 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC28.6■■■□□ 2.17
NPHP1O15259 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC28.6■■■□□ 2.17
NPHP1O15259 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC28.6■■■□□ 2.17
NPHP1O15259 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC28.6■■■□□ 2.17
NPHP1O15259 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
NPHP1O15259 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
NPHP1O15259 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms