Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDCBPO00560 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDCBPO00560 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDCBPO00560 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDCBPO00560 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDCBPO00560 AC233723.2-201ENST00000623798 2106 ntBASIC19.28■□□□□ 0.68
SDCBPO00560 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
SDCBPO00560 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDCBPO00560 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDCBPO00560 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SDCBPO00560 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.28■□□□□ 0.68
SDCBPO00560 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.28■□□□□ 0.68
SDCBPO00560 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SDCBPO00560 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SDCBPO00560 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SDCBPO00560 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.28■□□□□ 0.68
SDCBPO00560 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDCBPO00560 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SDCBPO00560 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDCBPO00560 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDCBPO00560 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SDCBPO00560 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDCBPO00560 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SDCBPO00560 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.27■□□□□ 0.68
SDCBPO00560 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
SDCBPO00560 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.27■□□□□ 0.68
SDCBPO00560 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SDCBPO00560 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.26■□□□□ 0.67
SDCBPO00560 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDCBPO00560 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDCBPO00560 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDCBPO00560 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SDCBPO00560 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.26■□□□□ 0.67
SDCBPO00560 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDCBPO00560 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDCBPO00560 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.25■□□□□ 0.67
SDCBPO00560 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDCBPO00560 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDCBPO00560 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
SDCBPO00560 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SDCBPO00560 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.25■□□□□ 0.67
SDCBPO00560 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.25■□□□□ 0.67
SDCBPO00560 EP400NL-214ENST00000641289 2402 ntBASIC19.25■□□□□ 0.67
SDCBPO00560 ANOS2P-203ENST00000472227 1816 ntBASIC19.25■□□□□ 0.67
SDCBPO00560 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SDCBPO00560 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SDCBPO00560 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDCBPO00560 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SDCBPO00560 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDCBPO00560 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDCBPO00560 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDCBPO00560 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDCBPO00560 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SDCBPO00560 AL592295.1-201ENST00000400984 884 ntBASIC19.24■□□□□ 0.67
SDCBPO00560 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC19.24■□□□□ 0.67
SDCBPO00560 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDCBPO00560 DUX4L18-201ENST00000553347 1267 ntBASIC19.24■□□□□ 0.67
SDCBPO00560 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDCBPO00560 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDCBPO00560 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDCBPO00560 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDCBPO00560 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.24■□□□□ 0.67
SDCBPO00560 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDCBPO00560 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.24■□□□□ 0.67
SDCBPO00560 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDCBPO00560 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDCBPO00560 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDCBPO00560 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.23■□□□□ 0.67
SDCBPO00560 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDCBPO00560 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDCBPO00560 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.23■□□□□ 0.67
SDCBPO00560 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.23■□□□□ 0.67
SDCBPO00560 AC139795.1-202ENST00000500444 432 ntBASIC19.23■□□□□ 0.67
SDCBPO00560 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDCBPO00560 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.23■□□□□ 0.67
SDCBPO00560 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDCBPO00560 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDCBPO00560 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDCBPO00560 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SDCBPO00560 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDCBPO00560 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDCBPO00560 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDCBPO00560 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDCBPO00560 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.22■□□□□ 0.67
SDCBPO00560 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.22■□□□□ 0.67
SDCBPO00560 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDCBPO00560 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SDCBPO00560 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SDCBPO00560 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SDCBPO00560 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDCBPO00560 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
SDCBPO00560 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDCBPO00560 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.21■□□□□ 0.67
SDCBPO00560 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDCBPO00560 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDCBPO00560 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.21■□□□□ 0.67
SDCBPO00560 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.21■□□□□ 0.67
SDCBPO00560 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDCBPO00560 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.21■□□□□ 0.67
SDCBPO00560 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms