Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MIR6799-201ENST00000620297 69 ntBASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 AC092135.3-201ENST00000624151 1846 ntBASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 FAM86MP-201ENST00000340703 885 ntBASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 AL591846.1-201ENST00000451736 433 ntBASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 FAM8A2P-201ENST00000528813 1142 ntBASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRIM39Q9HCM9 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.65□□□□□ -0.07
TRIM39Q9HCM9 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 AL137784.3-201ENST00000623858 2288 ntBASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 MIR663B-201ENST00000408361 115 ntBASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 AL354877.1-201ENST00000424412 413 ntBASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms