Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC12.51□□□□□ -0.41
COL12A1Q99715 NAT9-204ENST00000578822 839 ntTSL 3 BASIC12.51□□□□□ -0.41
COL12A1Q99715 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC12.51□□□□□ -0.41
COL12A1Q99715 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC12.5□□□□□ -0.41
COL12A1Q99715 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC12.5□□□□□ -0.41
COL12A1Q99715 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC12.5□□□□□ -0.41
COL12A1Q99715 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
COL12A1Q99715 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 FAM86FP-201ENST00000338711 969 ntBASIC12.5□□□□□ -0.41
COL12A1Q99715 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC12.5□□□□□ -0.41
COL12A1Q99715 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC12.5□□□□□ -0.41
COL12A1Q99715 GALP-202ENST00000440823 889 ntTSL 5 BASIC12.5□□□□□ -0.41
COL12A1Q99715 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC12.5□□□□□ -0.41
COL12A1Q99715 SNRPD2P2-201ENST00000473818 333 ntBASIC12.5□□□□□ -0.41
COL12A1Q99715 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
COL12A1Q99715 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
COL12A1Q99715 BOLA3P2-201ENST00000586496 323 ntBASIC12.5□□□□□ -0.41
COL12A1Q99715 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC12.5□□□□□ -0.41
COL12A1Q99715 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.5□□□□□ -0.41
COL12A1Q99715 WAC-202ENST00000347934 2839 ntTSL 5 BASIC12.5□□□□□ -0.41
COL12A1Q99715 AL391005.1-201ENST00000623953 2435 ntBASIC12.5□□□□□ -0.41
COL12A1Q99715 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
COL12A1Q99715 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC12.5□□□□□ -0.41
COL12A1Q99715 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC12.5□□□□□ -0.41
COL12A1Q99715 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC12.5□□□□□ -0.41
COL12A1Q99715 AP000354.1-201ENST00000396982 456 ntBASIC12.5□□□□□ -0.41
COL12A1Q99715 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC12.5□□□□□ -0.41
COL12A1Q99715 RN7SL69P-201ENST00000468423 272 ntBASIC12.5□□□□□ -0.41
COL12A1Q99715 ALG1L7P-201ENST00000502317 768 ntBASIC12.5□□□□□ -0.41
COL12A1Q99715 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC12.5□□□□□ -0.41
COL12A1Q99715 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC12.5□□□□□ -0.41
COL12A1Q99715 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC12.5□□□□□ -0.41
COL12A1Q99715 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC12.5□□□□□ -0.41
COL12A1Q99715 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC12.5□□□□□ -0.41
COL12A1Q99715 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL12A1Q99715 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
COL12A1Q99715 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 AC232323.1-201ENST00000540724 2099 ntBASIC12.49□□□□□ -0.41
COL12A1Q99715 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 AL365181.1-201ENST00000564032 1828 ntBASIC12.49□□□□□ -0.41
COL12A1Q99715 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 AC022080.1-201ENST00000366255 781 ntBASIC12.49□□□□□ -0.41
COL12A1Q99715 AIG1-203ENST00000367596 559 ntTSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 SOD1-202ENST00000389995 865 ntTSL 3 BASIC12.49□□□□□ -0.41
COL12A1Q99715 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 CDKN2A-AS1-201ENST00000441769 823 ntBASIC12.49□□□□□ -0.41
COL12A1Q99715 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
COL12A1Q99715 DPY19L2P4-201ENST00000479881 442 ntBASIC12.49□□□□□ -0.41
COL12A1Q99715 RN7SL363P-201ENST00000482412 273 ntBASIC12.49□□□□□ -0.41
COL12A1Q99715 RN7SL375P-201ENST00000492442 298 ntBASIC12.49□□□□□ -0.41
COL12A1Q99715 AC095040.1-201ENST00000513286 675 ntBASIC12.49□□□□□ -0.41
COL12A1Q99715 AC004923.3-201ENST00000527532 355 ntBASIC12.49□□□□□ -0.41
COL12A1Q99715 VENTXP3-201ENST00000546480 773 ntBASIC12.49□□□□□ -0.41
COL12A1Q99715 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC12.49□□□□□ -0.41
COL12A1Q99715 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC12.49□□□□□ -0.41
COL12A1Q99715 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC12.49□□□□□ -0.41
COL12A1Q99715 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC12.49□□□□□ -0.41
COL12A1Q99715 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
COL12A1Q99715 BCAS4-206ENST00000609336 787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 SHMT1P1-201ENST00000419974 1312 ntBASIC12.49□□□□□ -0.41
COL12A1Q99715 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms