Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
VPS13CQ709C8 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC11.87□□□□□ -0.51
VPS13CQ709C8 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
VPS13CQ709C8 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
VPS13CQ709C8 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
VPS13CQ709C8 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
VPS13CQ709C8 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
VPS13CQ709C8 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC11.87□□□□□ -0.51
VPS13CQ709C8 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC11.87□□□□□ -0.51
VPS13CQ709C8 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
VPS13CQ709C8 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
VPS13CQ709C8 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
VPS13CQ709C8 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
VPS13CQ709C8 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
VPS13CQ709C8 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
VPS13CQ709C8 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
VPS13CQ709C8 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC11.87□□□□□ -0.51
VPS13CQ709C8 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
VPS13CQ709C8 CES1P2-201ENST00000566467 1242 ntBASIC11.87□□□□□ -0.51
VPS13CQ709C8 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC11.86□□□□□ -0.51
VPS13CQ709C8 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 KNOP1P1-201ENST00000542108 989 ntBASIC11.86□□□□□ -0.51
VPS13CQ709C8 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 APOC1-209ENST00000592885 562 ntTSL 3 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 AL136172.1-201ENST00000598590 1394 ntBASIC11.86□□□□□ -0.51
VPS13CQ709C8 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 AC015688.4-201ENST00000580780 1647 ntBASIC11.86□□□□□ -0.51
VPS13CQ709C8 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 LINP1-201ENST00000417112 917 ntTSL 2 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 NEK4P3-201ENST00000604859 544 ntBASIC11.86□□□□□ -0.51
VPS13CQ709C8 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
VPS13CQ709C8 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 HNRNPA1P2-207ENST00000432375 960 ntBASIC11.86□□□□□ -0.51
VPS13CQ709C8 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 AC020904.3-201ENST00000624199 442 ntBASIC11.86□□□□□ -0.51
VPS13CQ709C8 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC11.86□□□□□ -0.51
VPS13CQ709C8 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC11.85□□□□□ -0.51
VPS13CQ709C8 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13CQ709C8 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13CQ709C8 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
VPS13CQ709C8 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13CQ709C8 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13CQ709C8 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13CQ709C8 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC11.85□□□□□ -0.51
VPS13CQ709C8 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13CQ709C8 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13CQ709C8 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC11.85□□□□□ -0.51
VPS13CQ709C8 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC11.85□□□□□ -0.51
VPS13CQ709C8 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13CQ709C8 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13CQ709C8 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC11.85□□□□□ -0.51
VPS13CQ709C8 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13CQ709C8 HNRNPA1P25-201ENST00000422644 937 ntBASIC11.85□□□□□ -0.51
VPS13CQ709C8 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC11.85□□□□□ -0.51
VPS13CQ709C8 HIST1H2APS2-201ENST00000454426 370 ntBASIC11.85□□□□□ -0.51
VPS13CQ709C8 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC11.85□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms