Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
H3F3AP84243 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
H3F3AP84243 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.18□□□□□ -0.3
H3F3AP84243 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.18□□□□□ -0.3
H3F3AP84243 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.18□□□□□ -0.3
H3F3AP84243 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
H3F3AP84243 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.18□□□□□ -0.3
H3F3AP84243 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.18□□□□□ -0.3
H3F3AP84243 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.18□□□□□ -0.3
H3F3AP84243 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.18□□□□□ -0.3
H3F3AP84243 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.18□□□□□ -0.3
H3F3AP84243 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.18□□□□□ -0.3
H3F3AP84243 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.18□□□□□ -0.3
H3F3AP84243 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.18□□□□□ -0.3
H3F3AP84243 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.18□□□□□ -0.3
H3F3AP84243 DUX4L46-201ENST00000566845 751 ntBASIC13.18□□□□□ -0.3
H3F3AP84243 MIR4741-201ENST00000579822 90 ntBASIC13.18□□□□□ -0.3
H3F3AP84243 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.18□□□□□ -0.3
H3F3AP84243 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
H3F3AP84243 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 AC007191.1-201ENST00000623179 2995 ntBASIC13.18□□□□□ -0.3
H3F3AP84243 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.18□□□□□ -0.3
H3F3AP84243 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.18□□□□□ -0.3
H3F3AP84243 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13.18□□□□□ -0.3
H3F3AP84243 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.18□□□□□ -0.3
H3F3AP84243 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
H3F3AP84243 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
H3F3AP84243 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
H3F3AP84243 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.17□□□□□ -0.3
H3F3AP84243 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 TUBB1P2-201ENST00000422712 1306 ntBASIC13.17□□□□□ -0.3
H3F3AP84243 TUBB1P1-201ENST00000503144 1300 ntBASIC13.17□□□□□ -0.3
H3F3AP84243 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
H3F3AP84243 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 MIR326-201ENST00000362220 95 ntBASIC13.17□□□□□ -0.3
H3F3AP84243 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
H3F3AP84243 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC13.17□□□□□ -0.3
H3F3AP84243 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.17□□□□□ -0.3
H3F3AP84243 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.17□□□□□ -0.3
H3F3AP84243 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.17□□□□□ -0.3
H3F3AP84243 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 AC132192.2-201ENST00000596206 1147 ntBASIC13.17□□□□□ -0.3
H3F3AP84243 AC009955.4-201ENST00000597192 544 ntBASIC13.17□□□□□ -0.3
H3F3AP84243 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.17□□□□□ -0.3
H3F3AP84243 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
H3F3AP84243 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 KRT8P28-201ENST00000433288 1390 ntBASIC13.17□□□□□ -0.3
H3F3AP84243 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3AP84243 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3AP84243 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms