Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
RNF4P78317 AC244394.1-201ENST00000435000 1665 ntBASIC13.65□□□□□ -0.22
RNF4P78317 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 AL354702.1-201ENST00000442006 1960 ntBASIC13.65□□□□□ -0.22
RNF4P78317 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
RNF4P78317 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.65□□□□□ -0.23
RNF4P78317 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
RNF4P78317 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
RNF4P78317 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
RNF4P78317 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.64□□□□□ -0.23
RNF4P78317 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.64□□□□□ -0.23
RNF4P78317 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.64□□□□□ -0.23
RNF4P78317 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.64□□□□□ -0.23
RNF4P78317 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.64□□□□□ -0.23
RNF4P78317 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 RNMTL1P1-201ENST00000454103 560 ntBASIC13.64□□□□□ -0.23
RNF4P78317 AC126915.1-201ENST00000522847 1038 ntBASIC13.64□□□□□ -0.23
RNF4P78317 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.64□□□□□ -0.23
RNF4P78317 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 MIR6720-201ENST00000611664 98 ntBASIC13.64□□□□□ -0.23
RNF4P78317 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.64□□□□□ -0.23
RNF4P78317 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
RNF4P78317 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.64□□□□□ -0.23
RNF4P78317 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
RNF4P78317 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 OR2I1P-209ENST00000641730 5365 ntBASIC13.64□□□□□ -0.23
RNF4P78317 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RNF4P78317 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.64□□□□□ -0.23
RNF4P78317 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.64□□□□□ -0.23
RNF4P78317 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.64□□□□□ -0.23
RNF4P78317 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.64□□□□□ -0.23
RNF4P78317 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.63□□□□□ -0.23
RNF4P78317 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
RNF4P78317 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.63□□□□□ -0.23
RNF4P78317 AC006504.5-208ENST00000588784 2401 ntBASIC13.63□□□□□ -0.23
RNF4P78317 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
RNF4P78317 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
RNF4P78317 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
RNF4P78317 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
RNF4P78317 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
RNF4P78317 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.63□□□□□ -0.23
RNF4P78317 AC012441.2-201ENST00000444843 739 ntBASIC13.63□□□□□ -0.23
RNF4P78317 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.63□□□□□ -0.23
RNF4P78317 AP001258.2-201ENST00000529891 490 ntBASIC13.63□□□□□ -0.23
RNF4P78317 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC13.63□□□□□ -0.23
RNF4P78317 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.63□□□□□ -0.23
RNF4P78317 AC005324.6-201ENST00000587972 613 ntBASIC13.63□□□□□ -0.23
RNF4P78317 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
RNF4P78317 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
RNF4P78317 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
RNF4P78317 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
RNF4P78317 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
RNF4P78317 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
RNF4P78317 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms