Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC012441.1-201ENST00000446669 685 ntBASIC14.26□□□□□ -0.13
FOXA1P55317 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.26□□□□□ -0.13
FOXA1P55317 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 AC190387.1-201ENST00000551683 408 ntBASIC14.26□□□□□ -0.13
FOXA1P55317 SORD2P-201ENST00000558556 1069 ntBASIC14.26□□□□□ -0.13
FOXA1P55317 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.26□□□□□ -0.13
FOXA1P55317 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXA1P55317 AC140912.1-201ENST00000577171 1054 ntBASIC14.26□□□□□ -0.13
FOXA1P55317 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
FOXA1P55317 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
FOXA1P55317 BX088702.1-201ENST00000610784 235 ntBASIC14.26□□□□□ -0.13
FOXA1P55317 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.26□□□□□ -0.13
FOXA1P55317 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXA1P55317 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXA1P55317 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
FOXA1P55317 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
FOXA1P55317 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXA1P55317 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
FOXA1P55317 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXA1P55317 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
FOXA1P55317 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
FOXA1P55317 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA1P55317 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA1P55317 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 AC107918.4-201ENST00000641966 3141 ntBASIC14.25□□□□□ -0.13
FOXA1P55317 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA1P55317 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 DGCR5-201ENST00000399539 862 ntBASIC14.25□□□□□ -0.13
FOXA1P55317 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 BAATP1-201ENST00000412284 1225 ntBASIC14.25□□□□□ -0.13
FOXA1P55317 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.25□□□□□ -0.13
FOXA1P55317 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.25□□□□□ -0.13
FOXA1P55317 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.25□□□□□ -0.13
FOXA1P55317 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.25□□□□□ -0.13
FOXA1P55317 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA1P55317 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA1P55317 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA1P55317 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA1P55317 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
FOXA1P55317 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.25□□□□□ -0.13
FOXA1P55317 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA1P55317 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA1P55317 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms