Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 FAM156B-201ENST00000416841 2537 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 LITAF-203ENST00000413364 2292 ntTSL 2 BASIC12.34□□□□□ -0.43
HOXA1P49639 AC073548.1-201ENST00000624088 1882 ntBASIC12.34□□□□□ -0.43
HOXA1P49639 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
HOXA1P49639 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
HOXA1P49639 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.43
HOXA1P49639 CETN4P-206ENST00000642099 2168 ntBASIC12.33□□□□□ -0.44
HOXA1P49639 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 FAM58DP-201ENST00000428076 619 ntBASIC12.33□□□□□ -0.44
HOXA1P49639 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC12.33□□□□□ -0.44
HOXA1P49639 DNAJB3-201ENST00000446806 729 ntBASIC12.33□□□□□ -0.44
HOXA1P49639 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 ZNF148-205ENST00000484491 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC12.33□□□□□ -0.44
HOXA1P49639 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 AL079307.3-201ENST00000556114 283 ntBASIC12.33□□□□□ -0.44
HOXA1P49639 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 AL133215.2-201ENST00000609242 977 ntBASIC12.33□□□□□ -0.44
HOXA1P49639 AL513210.1-201ENST00000629608 234 ntBASIC12.33□□□□□ -0.44
HOXA1P49639 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 DEK-201ENST00000244776 1441 ntTSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC12.33□□□□□ -0.44
HOXA1P49639 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 EDARADD-202ENST00000359362 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 ABCB9-201ENST00000280560 3517 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC12.33□□□□□ -0.44
HOXA1P49639 GOLGA2P5-201ENST00000266746 2395 ntBASIC12.33□□□□□ -0.44
HOXA1P49639 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
HOXA1P49639 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
HOXA1P49639 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXA1P49639 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HOXA1P49639 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC12.32□□□□□ -0.44
HOXA1P49639 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HOXA1P49639 AC018529.2-202ENST00000611482 3087 ntBASIC12.32□□□□□ -0.44
HOXA1P49639 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HOXA1P49639 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms