Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC12.15□□□□□ -0.46
CDX1P47902 MIR4313-201ENST00000580760 101 ntBASIC12.15□□□□□ -0.46
CDX1P47902 BRI3BPP1-201ENST00000594224 787 ntBASIC12.15□□□□□ -0.46
CDX1P47902 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC12.15□□□□□ -0.46
CDX1P47902 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC12.15□□□□□ -0.46
CDX1P47902 AC000095.1-201ENST00000603208 874 ntBASIC12.15□□□□□ -0.46
CDX1P47902 AC133539.2-201ENST00000604757 467 ntBASIC12.15□□□□□ -0.46
CDX1P47902 AL033527.5-201ENST00000641382 801 ntBASIC12.15□□□□□ -0.46
CDX1P47902 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
CDX1P47902 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC12.15□□□□□ -0.46
CDX1P47902 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 TK1-203ENST00000588734 1681 ntTSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
CDX1P47902 MAPT-IT1-201ENST00000624111 3016 ntBASIC12.15□□□□□ -0.46
CDX1P47902 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC12.15□□□□□ -0.47
CDX1P47902 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC12.15□□□□□ -0.47
CDX1P47902 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.47
CDX1P47902 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
CDX1P47902 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
CDX1P47902 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC12.14□□□□□ -0.47
CDX1P47902 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
CDX1P47902 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC12.14□□□□□ -0.47
CDX1P47902 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
CDX1P47902 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC12.14□□□□□ -0.47
CDX1P47902 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
CDX1P47902 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
CDX1P47902 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
CDX1P47902 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC12.14□□□□□ -0.47
CDX1P47902 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 ZBED1P1-201ENST00000502364 1930 ntBASIC12.14□□□□□ -0.47
CDX1P47902 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
CDX1P47902 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.14□□□□□ -0.47
CDX1P47902 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 GIMAP3P-201ENST00000495150 836 ntBASIC12.14□□□□□ -0.47
CDX1P47902 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC12.14□□□□□ -0.47
CDX1P47902 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC12.14□□□□□ -0.47
CDX1P47902 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
CDX1P47902 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC12.14□□□□□ -0.47
CDX1P47902 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC12.14□□□□□ -0.47
CDX1P47902 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC12.14□□□□□ -0.47
CDX1P47902 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC12.14□□□□□ -0.47
CDX1P47902 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC12.14□□□□□ -0.47
CDX1P47902 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC12.14□□□□□ -0.47
CDX1P47902 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC12.14□□□□□ -0.47
CDX1P47902 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 WFDC1-204ENST00000613603 549 ntBASIC12.14□□□□□ -0.47
CDX1P47902 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC12.14□□□□□ -0.47
CDX1P47902 EML1-203ENST00000334192 4064 ntTSL 5 BASIC12.14□□□□□ -0.47
CDX1P47902 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 AL121723.1-201ENST00000445194 1519 ntBASIC12.14□□□□□ -0.47
CDX1P47902 AC015818.8-201ENST00000587907 1519 ntBASIC12.14□□□□□ -0.47
CDX1P47902 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
CDX1P47902 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC12.14□□□□□ -0.47
CDX1P47902 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
CDX1P47902 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
CDX1P47902 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC12.14□□□□□ -0.47
CDX1P47902 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC12.14□□□□□ -0.47
CDX1P47902 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC12.14□□□□□ -0.47
CDX1P47902 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CDX1P47902 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
CDX1P47902 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms