Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC18.71■□□□□ 0.59
COL18A1P39060 BCRP4-201ENST00000506079 804 ntBASIC18.71■□□□□ 0.59
COL18A1P39060 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC18.71■□□□□ 0.59
COL18A1P39060 AC132825.4-202ENST00000578792 434 ntBASIC18.71■□□□□ 0.59
COL18A1P39060 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC18.71■□□□□ 0.59
COL18A1P39060 URAHP-205ENST00000610227 398 ntBASIC18.71■□□□□ 0.59
COL18A1P39060 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC18.71■□□□□ 0.59
COL18A1P39060 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL18A1P39060 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
COL18A1P39060 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC18.71■□□□□ 0.59
COL18A1P39060 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL18A1P39060 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL18A1P39060 RN7SL832P-201ENST00000607781 1756 ntBASIC18.71■□□□□ 0.59
COL18A1P39060 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL18A1P39060 AC092115.1-201ENST00000566277 1402 ntBASIC18.71■□□□□ 0.59
COL18A1P39060 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL18A1P39060 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.71■□□□□ 0.59
COL18A1P39060 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC18.71■□□□□ 0.59
COL18A1P39060 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL18A1P39060 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.58
COL18A1P39060 WARS-203ENST00000358655 2466 ntTSL 2 BASIC18.71■□□□□ 0.58
COL18A1P39060 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
COL18A1P39060 RHOC-205ENST00000369636 786 ntTSL 2 BASIC18.7■□□□□ 0.58
COL18A1P39060 NQO2-204ENST00000380454 851 ntTSL 2 BASIC18.7■□□□□ 0.58
COL18A1P39060 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 AP000354.1-201ENST00000396982 456 ntBASIC18.7■□□□□ 0.58
COL18A1P39060 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC18.7■□□□□ 0.58
COL18A1P39060 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
COL18A1P39060 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC18.7■□□□□ 0.58
COL18A1P39060 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC18.7■□□□□ 0.58
COL18A1P39060 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC18.7■□□□□ 0.58
COL18A1P39060 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
COL18A1P39060 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC18.7■□□□□ 0.58
COL18A1P39060 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
COL18A1P39060 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.7■□□□□ 0.58
COL18A1P39060 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
COL18A1P39060 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL18A1P39060 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC18.7■□□□□ 0.58
COL18A1P39060 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
COL18A1P39060 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
COL18A1P39060 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.7■□□□□ 0.58
COL18A1P39060 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.7■□□□□ 0.58
COL18A1P39060 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC18.7■□□□□ 0.58
COL18A1P39060 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 ACTBP14-201ENST00000411655 1089 ntBASIC18.7■□□□□ 0.58
COL18A1P39060 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 GOLGA2P8-201ENST00000505201 779 ntBASIC18.7■□□□□ 0.58
COL18A1P39060 MT3-202ENST00000561640 514 ntTSL 3 BASIC18.7■□□□□ 0.58
COL18A1P39060 AC073869.4-201ENST00000620841 800 ntBASIC18.7■□□□□ 0.58
COL18A1P39060 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
COL18A1P39060 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL18A1P39060 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.7■□□□□ 0.58
COL18A1P39060 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC18.69■□□□□ 0.58
COL18A1P39060 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC18.69■□□□□ 0.58
COL18A1P39060 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
COL18A1P39060 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC18.69■□□□□ 0.58
COL18A1P39060 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
COL18A1P39060 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
COL18A1P39060 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 TCAF2P1-201ENST00000291129 2421 ntBASIC18.69■□□□□ 0.58
COL18A1P39060 SNORA57-201ENST00000383870 149 ntBASIC18.69■□□□□ 0.58
COL18A1P39060 AC004522.1-201ENST00000419978 654 ntBASIC18.69■□□□□ 0.58
COL18A1P39060 HNRNPA1P5-201ENST00000558213 966 ntBASIC18.69■□□□□ 0.58
COL18A1P39060 AC018846.1-201ENST00000568231 183 ntBASIC18.69■□□□□ 0.58
COL18A1P39060 MIR4746-201ENST00000579802 71 ntBASIC18.69■□□□□ 0.58
COL18A1P39060 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC18.69■□□□□ 0.58
COL18A1P39060 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC18.69■□□□□ 0.58
COL18A1P39060 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL18A1P39060 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL18A1P39060 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC18.69■□□□□ 0.58
COL18A1P39060 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.69■□□□□ 0.58
COL18A1P39060 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL18A1P39060 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms