Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 AL138725.1-201ENST00000407347 1314 ntBASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 MPV17-204ENST00000399052 749 ntTSL 4 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 AC006335.1-201ENST00000445200 547 ntBASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 AL596276.2-201ENST00000447525 331 ntBASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 PRKXP1-201ENST00000561423 1122 ntBASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 CENPX-208ENST00000584347 799 ntTSL 2 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 SPCS2P2-201ENST00000603270 608 ntBASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
TM9SF3Q9HD45 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 MYO15B-237ENST00000642007 4893 ntBASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 RN7SKP214-201ENST00000364208 315 ntBASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 HNRNPA1P41-201ENST00000397777 928 ntBASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 AC132192.2-201ENST00000596206 1147 ntBASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 AL132994.2-201ENST00000603120 687 ntBASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TM9SF3Q9HD45 AC023024.2-201ENST00000623561 1993 ntBASIC14.74□□□□□ -0.05
TM9SF3Q9HD45 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TM9SF3Q9HD45 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
TM9SF3Q9HD45 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TM9SF3Q9HD45 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TM9SF3Q9HD45 AMT-239ENST00000636865 1914 ntTSL 5 BASIC14.74□□□□□ -0.05
TM9SF3Q9HD45 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TM9SF3Q9HD45 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TM9SF3Q9HD45 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms