Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC007191.1-201ENST00000623179 2995 ntBASIC16.17■□□□□ 0.18
TRAIPQ9BWF2 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TRAIPQ9BWF2 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAIPQ9BWF2 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAIPQ9BWF2 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAIPQ9BWF2 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
TRAIPQ9BWF2 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
TRAIPQ9BWF2 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAIPQ9BWF2 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAIPQ9BWF2 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAIPQ9BWF2 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAIPQ9BWF2 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 VDAC1P1-201ENST00000439229 848 ntBASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 UPF3AP2-201ENST00000457924 1132 ntBASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 HLA-J-204ENST00000495278 958 ntBASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 AC125604.1-201ENST00000496255 707 ntBASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 AC105129.2-201ENST00000559536 390 ntBASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 AP001505.2-201ENST00000616815 443 ntBASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAIPQ9BWF2 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 AMT-239ENST00000636865 1914 ntTSL 5 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 AC244394.1-201ENST00000435000 1665 ntBASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 RPL18P13-201ENST00000478088 569 ntBASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 AC015967.2-201ENST00000624092 234 ntBASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 AC006435.4-201ENST00000625037 234 ntBASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 AL356737.1-201ENST00000634391 234 ntBASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 AL805961.1-203ENST00000641078 1258 ntBASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 Z98259.2-201ENST00000641583 609 ntBASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 SALL4P5-201ENST00000419001 1760 ntBASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 KRT8P19-201ENST00000551916 1455 ntBASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAIPQ9BWF2 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
TRAIPQ9BWF2 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC16.14■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms