Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 ZNF436-AS1-201ENST00000335648 2547 ntBASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 HNRNPABP1-201ENST00000406003 734 ntBASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 MIR4640-201ENST00000581824 90 ntBASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 AC127383.1-201ENST00000444697 1800 ntBASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 EEF1DP5-201ENST00000431410 772 ntBASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 COQ4-204ENST00000608951 781 ntTSL 2 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 AL050341.2-201ENST00000567508 1541 ntBASIC12.23□□□□□ -0.45
CSMD1Q96PZ7 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 AC087072.1-201ENST00000603727 421 ntBASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 AC092384.3-202ENST00000564646 2873 ntBASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 ANKRD26P1-203ENST00000569528 966 ntBASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 RN7SL665P-201ENST00000578793 300 ntBASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 AC005746.3-201ENST00000614751 393 ntBASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
CSMD1Q96PZ7 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 AL591122.2-201ENST00000624125 1853 ntBASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 AC136604.1-202ENST00000425471 771 ntBASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 RNA5SP406-201ENST00000516106 112 ntBASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 CSTP2-201ENST00000610599 398 ntBASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD1Q96PZ7 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms