Protein–RNA interactions for Protein: Q8WXH0

SYNE2, Nesprin-2, humanhuman

Known RBP Predictions only

Length 6,885 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2Q8WXH0 RN7SK-201ENST00000636484 328 ntBASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 PGR-209ENST00000617858 2816 ntTSL 5 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 SPG20-AS1-203ENST00000493739 566 ntTSL 3 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 AC105424.1-201ENST00000514583 209 ntBASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 AC002347.2-201ENST00000584139 171 ntTSL 3 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 KRTAP4-6-201ENST00000345847 1055 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 AC002066.1-201ENST00000446355 514 ntTSL 5 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 AL589674.1-201ENST00000454401 222 ntTSL 5 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 RN7SL307P-201ENST00000490342 295 ntBASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 AL133297.2-201ENST00000563162 485 ntTSL 2 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 AC090772.2-201ENST00000578443 564 ntTSL 4 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE2Q8WXH0 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 HLA-DRA-201ENST00000374982 1169 ntBASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 AP001630.1-201ENST00000428410 437 ntTSL 2 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 AL035414.1-201ENST00000451327 857 ntBASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 AC011456.1-201ENST00000592270 536 ntTSL 4 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 NAA10-205ENST00000393712 908 ntTSL 5 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 AC004951.2-201ENST00000420754 789 ntBASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 RPL14P3-201ENST00000476715 622 ntBASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 SLC25A5P6-201ENST00000515328 886 ntBASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 ZNF677-207ENST00000598806 701 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 AL109983.1-201ENST00000603234 646 ntBASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 AC009113.1-201ENST00000570267 2443 ntBASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 YAE1D1-201ENST00000223273 899 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 TBC1D21-201ENST00000300504 1207 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 SNORD88B-201ENST00000408454 91 ntBASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 FAM86B1-215ENST00000533513 725 ntTSL 5 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 DPPA5P4-201ENST00000559021 365 ntBASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 SLC25A18-202ENST00000399813 2057 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE2Q8WXH0 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms