Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 AC013355.1-201ENST00000562625 723 ntBASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHROOM3Q8TF72 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 NDUFAB1P1-201ENST00000404262 460 ntBASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 MPRIPP1-201ENST00000452433 1089 ntBASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 TMEM198B-204ENST00000484016 896 ntBASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 MIR5572-201ENST00000583188 137 ntBASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 HSPA8P5-201ENST00000456928 2069 ntBASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 YBX1P6-201ENST00000442962 1002 ntBASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 AL022328.3-201ENST00000607943 679 ntBASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 MIR6074-201ENST00000612054 107 ntBASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 AC008687.7-202ENST00000637404 953 ntBASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC14.96□□□□□ -0.01
SHROOM3Q8TF72 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
SHROOM3Q8TF72 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
SHROOM3Q8TF72 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
SHROOM3Q8TF72 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
SHROOM3Q8TF72 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 E2F3P2-201ENST00000447755 1422 ntBASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 HLA-J-204ENST00000495278 958 ntBASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 FADS2-212ENST00000522639 360 ntTSL 5 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 FADS2-215ENST00000574708 385 ntTSL 3 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 MIR4741-201ENST00000579822 90 ntBASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms