Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.95□□□□□ -0.18
RAE1P78406 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.95□□□□□ -0.18
RAE1P78406 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.95□□□□□ -0.18
RAE1P78406 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.95□□□□□ -0.18
RAE1P78406 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC13.95□□□□□ -0.18
RAE1P78406 AC027237.1-201ENST00000560942 655 ntBASIC13.95□□□□□ -0.18
RAE1P78406 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.95□□□□□ -0.18
RAE1P78406 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC13.95□□□□□ -0.18
RAE1P78406 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.95□□□□□ -0.18
RAE1P78406 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RAE1P78406 OR2I1P-210ENST00000642037 4691 ntBASIC13.95□□□□□ -0.18
RAE1P78406 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RAE1P78406 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RAE1P78406 AC009093.10-201ENST00000641956 1442 ntBASIC13.95□□□□□ -0.18
RAE1P78406 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
RAE1P78406 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RAE1P78406 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.95□□□□□ -0.18
RAE1P78406 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
RAE1P78406 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.95□□□□□ -0.18
RAE1P78406 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.95□□□□□ -0.18
RAE1P78406 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RAE1P78406 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RAE1P78406 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RAE1P78406 AC090643.2-201ENST00000623442 2029 ntBASIC13.95□□□□□ -0.18
RAE1P78406 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RAE1P78406 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RAE1P78406 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
RAE1P78406 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.95□□□□□ -0.18
RAE1P78406 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.95□□□□□ -0.18
RAE1P78406 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RAE1P78406 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.95□□□□□ -0.18
RAE1P78406 DDC-213ENST00000617822 1809 ntTSL 3 BASIC13.94□□□□□ -0.18
RAE1P78406 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
RAE1P78406 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 AC064801.2-201ENST00000625052 1303 ntBASIC13.94□□□□□ -0.18
RAE1P78406 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.94□□□□□ -0.18
RAE1P78406 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
RAE1P78406 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.94□□□□□ -0.18
RAE1P78406 AC010141.1-201ENST00000411585 623 ntBASIC13.94□□□□□ -0.18
RAE1P78406 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.94□□□□□ -0.18
RAE1P78406 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.94□□□□□ -0.18
RAE1P78406 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.94□□□□□ -0.18
RAE1P78406 AL161932.2-201ENST00000435436 679 ntBASIC13.94□□□□□ -0.18
RAE1P78406 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
RAE1P78406 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.94□□□□□ -0.18
RAE1P78406 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
RAE1P78406 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC13.94□□□□□ -0.18
RAE1P78406 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.94□□□□□ -0.18
RAE1P78406 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.94□□□□□ -0.18
RAE1P78406 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.94□□□□□ -0.18
RAE1P78406 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.94□□□□□ -0.18
RAE1P78406 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
RAE1P78406 AC027601.3-201ENST00000622907 509 ntBASIC13.94□□□□□ -0.18
RAE1P78406 AC105233.6-201ENST00000642093 218 ntBASIC13.94□□□□□ -0.18
RAE1P78406 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.94□□□□□ -0.18
RAE1P78406 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RAE1P78406 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.94□□□□□ -0.18
RAE1P78406 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.93□□□□□ -0.18
RAE1P78406 AL161772.1-201ENST00000610494 4412 ntBASIC13.93□□□□□ -0.18
RAE1P78406 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RAE1P78406 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.93□□□□□ -0.18
RAE1P78406 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC13.93□□□□□ -0.18
RAE1P78406 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RAE1P78406 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RAE1P78406 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
RAE1P78406 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
RAE1P78406 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.93□□□□□ -0.18
RAE1P78406 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RAE1P78406 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RAE1P78406 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RAE1P78406 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.93□□□□□ -0.18
RAE1P78406 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.93□□□□□ -0.18
RAE1P78406 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.93□□□□□ -0.18
RAE1P78406 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms