Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA4P78363 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA4P78363 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA4P78363 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
ABCA4P78363 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
ABCA4P78363 AC027601.3-201ENST00000622907 509 ntBASIC12.68□□□□□ -0.38
ABCA4P78363 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC12.68□□□□□ -0.38
ABCA4P78363 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA4P78363 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
ABCA4P78363 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 INTS4P1-203ENST00000641008 3683 ntBASIC12.68□□□□□ -0.38
ABCA4P78363 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.68□□□□□ -0.38
ABCA4P78363 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
ABCA4P78363 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 MBP-202ENST00000355994 2772 ntTSL 5 BASIC12.68□□□□□ -0.38
ABCA4P78363 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
ABCA4P78363 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA4P78363 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
ABCA4P78363 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
ABCA4P78363 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
ABCA4P78363 ISCA2P1-201ENST00000425548 448 ntBASIC12.68□□□□□ -0.38
ABCA4P78363 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC12.68□□□□□ -0.38
ABCA4P78363 STUB1-204ENST00000564370 875 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA4P78363 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC12.68□□□□□ -0.38
ABCA4P78363 MIR6769A-201ENST00000617340 73 ntBASIC12.68□□□□□ -0.38
ABCA4P78363 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
ABCA4P78363 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA4P78363 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC12.68□□□□□ -0.38
ABCA4P78363 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
ABCA4P78363 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
ABCA4P78363 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
ABCA4P78363 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA4P78363 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC12.67□□□□□ -0.38
ABCA4P78363 PFN2-206ENST00000461930 606 ntTSL 4 BASIC12.67□□□□□ -0.38
ABCA4P78363 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC12.67□□□□□ -0.38
ABCA4P78363 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
ABCA4P78363 AL157792.1-201ENST00000488281 530 ntBASIC12.67□□□□□ -0.38
ABCA4P78363 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA4P78363 PHBP15-201ENST00000574228 665 ntBASIC12.67□□□□□ -0.38
ABCA4P78363 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
ABCA4P78363 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 CMC2-224ENST00000630396 481 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA4P78363 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA4P78363 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC12.67□□□□□ -0.38
ABCA4P78363 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.67□□□□□ -0.38
ABCA4P78363 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC12.67□□□□□ -0.38
ABCA4P78363 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 SALL4P5-201ENST00000419001 1760 ntBASIC12.67□□□□□ -0.38
ABCA4P78363 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 FAS-202ENST00000352159 1722 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA4P78363 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA4P78363 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms