Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC13.96□□□□□ -0.17
RFX3P48380 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
RFX3P48380 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC13.96□□□□□ -0.17
RFX3P48380 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.96□□□□□ -0.17
RFX3P48380 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
RFX3P48380 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
RFX3P48380 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 ACKR1-201ENST00000368121 1240 ntBASIC13.96□□□□□ -0.17
RFX3P48380 AL512384.1-201ENST00000406683 331 ntBASIC13.96□□□□□ -0.17
RFX3P48380 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.96□□□□□ -0.17
RFX3P48380 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC13.96□□□□□ -0.17
RFX3P48380 TMEM14DP-201ENST00000422205 345 ntBASIC13.96□□□□□ -0.17
RFX3P48380 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.96□□□□□ -0.17
RFX3P48380 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC13.96□□□□□ -0.17
RFX3P48380 AC012441.1-201ENST00000446669 685 ntBASIC13.96□□□□□ -0.17
RFX3P48380 BCRP2-202ENST00000447763 634 ntBASIC13.96□□□□□ -0.17
RFX3P48380 COX20P2-201ENST00000452636 358 ntBASIC13.96□□□□□ -0.17
RFX3P48380 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 AC106760.1-201ENST00000508690 800 ntBASIC13.96□□□□□ -0.17
RFX3P48380 BCRP6-201ENST00000510112 632 ntBASIC13.96□□□□□ -0.17
RFX3P48380 BCRP7-201ENST00000511549 544 ntBASIC13.96□□□□□ -0.17
RFX3P48380 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.96□□□□□ -0.17
RFX3P48380 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC13.96□□□□□ -0.17
RFX3P48380 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC13.96□□□□□ -0.17
RFX3P48380 AC105233.6-201ENST00000642093 218 ntBASIC13.96□□□□□ -0.17
RFX3P48380 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
RFX3P48380 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.17
RFX3P48380 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC13.96□□□□□ -0.17
RFX3P48380 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.96□□□□□ -0.17
RFX3P48380 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RFX3P48380 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
RFX3P48380 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RFX3P48380 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.18
RFX3P48380 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
RFX3P48380 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RFX3P48380 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
RFX3P48380 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
RFX3P48380 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
RFX3P48380 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
RFX3P48380 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.95□□□□□ -0.18
RFX3P48380 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
RFX3P48380 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.95□□□□□ -0.18
RFX3P48380 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.95□□□□□ -0.18
RFX3P48380 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
RFX3P48380 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.95□□□□□ -0.18
RFX3P48380 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
RFX3P48380 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.95□□□□□ -0.18
RFX3P48380 LINC01230-201ENST00000625222 3017 ntBASIC13.95□□□□□ -0.18
RFX3P48380 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
RFX3P48380 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
RFX3P48380 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
RFX3P48380 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
RFX3P48380 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.95□□□□□ -0.18
RFX3P48380 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.95□□□□□ -0.18
RFX3P48380 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC13.95□□□□□ -0.18
RFX3P48380 ACTG1P3-201ENST00000431775 1114 ntBASIC13.95□□□□□ -0.18
RFX3P48380 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 FO681548.1-201ENST00000455617 1132 ntBASIC13.95□□□□□ -0.18
RFX3P48380 GIMAP3P-201ENST00000495150 836 ntBASIC13.95□□□□□ -0.18
RFX3P48380 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC13.95□□□□□ -0.18
RFX3P48380 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
RFX3P48380 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC13.95□□□□□ -0.18
RFX3P48380 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC13.95□□□□□ -0.18
RFX3P48380 AC145423.3-201ENST00000615987 467 ntBASIC13.95□□□□□ -0.18
RFX3P48380 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
RFX3P48380 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
RFX3P48380 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
RFX3P48380 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.95□□□□□ -0.18
RFX3P48380 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms