Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC18.74■□□□□ 0.59
COL18A1P39060 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC18.74■□□□□ 0.59
COL18A1P39060 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC18.74■□□□□ 0.59
COL18A1P39060 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC18.74■□□□□ 0.59
COL18A1P39060 AC090510.3-201ENST00000615831 821 ntBASIC18.74■□□□□ 0.59
COL18A1P39060 AC010531.8-201ENST00000623341 685 ntBASIC18.74■□□□□ 0.59
COL18A1P39060 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
COL18A1P39060 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
COL18A1P39060 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC18.73■□□□□ 0.59
COL18A1P39060 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.73■□□□□ 0.59
COL18A1P39060 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL18A1P39060 ABCD1P4-201ENST00000399687 604 ntBASIC18.73■□□□□ 0.59
COL18A1P39060 PGAM1P11-201ENST00000416729 680 ntBASIC18.73■□□□□ 0.59
COL18A1P39060 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC18.73■□□□□ 0.59
COL18A1P39060 ANKRD26P1-203ENST00000569528 966 ntBASIC18.73■□□□□ 0.59
COL18A1P39060 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.73■□□□□ 0.59
COL18A1P39060 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL18A1P39060 RPL13AP3-202ENST00000494676 1473 ntBASIC18.73■□□□□ 0.59
COL18A1P39060 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL18A1P39060 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL18A1P39060 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL18A1P39060 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL18A1P39060 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL18A1P39060 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
COL18A1P39060 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL18A1P39060 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC18.73■□□□□ 0.59
COL18A1P39060 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL18A1P39060 HLA-DMA-202ENST00000395303 1007 ntBASIC18.73■□□□□ 0.59
COL18A1P39060 ASS1P2-201ENST00000439895 1223 ntBASIC18.73■□□□□ 0.59
COL18A1P39060 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL18A1P39060 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC18.73■□□□□ 0.59
COL18A1P39060 AC100858.1-201ENST00000514059 1228 ntBASIC18.73■□□□□ 0.59
COL18A1P39060 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC18.73■□□□□ 0.59
COL18A1P39060 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC18.73■□□□□ 0.59
COL18A1P39060 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
COL18A1P39060 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
COL18A1P39060 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC18.73■□□□□ 0.59
COL18A1P39060 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
COL18A1P39060 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC18.73■□□□□ 0.59
COL18A1P39060 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC18.73■□□□□ 0.59
COL18A1P39060 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC18.73■□□□□ 0.59
COL18A1P39060 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
COL18A1P39060 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL18A1P39060 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
COL18A1P39060 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
COL18A1P39060 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC18.73■□□□□ 0.59
COL18A1P39060 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC18.73■□□□□ 0.59
COL18A1P39060 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
COL18A1P39060 HPD-204ENST00000543163 1709 ntTSL 5 BASIC18.73■□□□□ 0.59
COL18A1P39060 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL18A1P39060 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL18A1P39060 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC18.72■□□□□ 0.59
COL18A1P39060 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC18.72■□□□□ 0.59
COL18A1P39060 AL157823.1-201ENST00000403727 628 ntBASIC18.72■□□□□ 0.59
COL18A1P39060 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC18.72■□□□□ 0.59
COL18A1P39060 AC104961.1-201ENST00000427605 771 ntBASIC18.72■□□□□ 0.59
COL18A1P39060 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC18.72■□□□□ 0.59
COL18A1P39060 TPT1P11-201ENST00000458482 498 ntBASIC18.72■□□□□ 0.59
COL18A1P39060 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC18.72■□□□□ 0.59
COL18A1P39060 AL590235.1-201ENST00000564650 861 ntBASIC18.72■□□□□ 0.59
COL18A1P39060 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC18.72■□□□□ 0.59
COL18A1P39060 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC18.72■□□□□ 0.59
COL18A1P39060 AC090505.1-201ENST00000430515 1834 ntBASIC18.72■□□□□ 0.59
COL18A1P39060 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC18.72■□□□□ 0.59
COL18A1P39060 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 AC068760.1-201ENST00000493579 1953 ntBASIC18.72■□□□□ 0.59
COL18A1P39060 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC18.72■□□□□ 0.59
COL18A1P39060 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL18A1P39060 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL18A1P39060 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL18A1P39060 GPI-205ENST00000586425 1799 ntTSL 5 BASIC18.71■□□□□ 0.59
COL18A1P39060 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.71■□□□□ 0.59
COL18A1P39060 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
COL18A1P39060 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL18A1P39060 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
COL18A1P39060 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC18.71■□□□□ 0.59
COL18A1P39060 SSR4-202ENST00000370085 526 ntTSL 2 BASIC18.71■□□□□ 0.59
COL18A1P39060 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms