Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC16.51■□□□□ 0.23
CIITAP33076 EIF4HP1-201ENST00000453115 687 ntBASIC16.51■□□□□ 0.23
CIITAP33076 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.51■□□□□ 0.23
CIITAP33076 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 AC125604.1-201ENST00000496255 707 ntBASIC16.51■□□□□ 0.23
CIITAP33076 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 AC005586.2-201ENST00000563946 837 ntBASIC16.51■□□□□ 0.23
CIITAP33076 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.51■□□□□ 0.23
CIITAP33076 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC16.51■□□□□ 0.23
CIITAP33076 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CIITAP33076 AP002414.2-201ENST00000591780 3365 ntBASIC16.51■□□□□ 0.23
CIITAP33076 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC16.51■□□□□ 0.23
CIITAP33076 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CIITAP33076 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
CIITAP33076 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 LINC02228-204ENST00000642115 2962 ntBASIC16.5■□□□□ 0.23
CIITAP33076 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CIITAP33076 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CIITAP33076 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.5■□□□□ 0.23
CIITAP33076 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 CALR4P-201ENST00000431943 946 ntBASIC16.5■□□□□ 0.23
CIITAP33076 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.5■□□□□ 0.23
CIITAP33076 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC16.5■□□□□ 0.23
CIITAP33076 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC16.5■□□□□ 0.23
CIITAP33076 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC16.5■□□□□ 0.23
CIITAP33076 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.5■□□□□ 0.23
CIITAP33076 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.5■□□□□ 0.23
CIITAP33076 AC026740.1-201ENST00000607068 791 ntBASIC16.5■□□□□ 0.23
CIITAP33076 AC104506.1-201ENST00000609247 429 ntBASIC16.5■□□□□ 0.23
CIITAP33076 AL136379.1-201ENST00000623471 2642 ntBASIC16.5■□□□□ 0.23
CIITAP33076 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CIITAP33076 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.5■□□□□ 0.23
CIITAP33076 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CIITAP33076 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC16.5■□□□□ 0.23
CIITAP33076 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CIITAP33076 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CIITAP33076 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CIITAP33076 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CIITAP33076 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CIITAP33076 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 AHCYP4-201ENST00000419201 1315 ntBASIC16.49■□□□□ 0.23
CIITAP33076 AC064801.2-201ENST00000625052 1303 ntBASIC16.49■□□□□ 0.23
CIITAP33076 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 RN7SL832P-201ENST00000607781 1756 ntBASIC16.49■□□□□ 0.23
CIITAP33076 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.49■□□□□ 0.23
CIITAP33076 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CIITAP33076 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC16.49■□□□□ 0.23
CIITAP33076 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CIITAP33076 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC16.49■□□□□ 0.23
CIITAP33076 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CIITAP33076 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 AL008707.1-201ENST00000422498 534 ntBASIC16.49■□□□□ 0.23
CIITAP33076 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.49■□□□□ 0.23
CIITAP33076 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC16.49■□□□□ 0.23
CIITAP33076 HIST2H2BC-201ENST00000498492 580 ntBASIC16.49■□□□□ 0.23
CIITAP33076 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC16.49■□□□□ 0.23
CIITAP33076 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC16.49■□□□□ 0.23
CIITAP33076 CCNC-217ENST00000523985 958 ntTSL 2 BASIC16.49■□□□□ 0.23
CIITAP33076 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC16.49■□□□□ 0.23
CIITAP33076 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC16.49■□□□□ 0.23
CIITAP33076 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.49■□□□□ 0.23
CIITAP33076 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC16.49■□□□□ 0.23
CIITAP33076 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CIITAP33076 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC16.49■□□□□ 0.23
CIITAP33076 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.49■□□□□ 0.23
CIITAP33076 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.49■□□□□ 0.23
CIITAP33076 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.49■□□□□ 0.23
CIITAP33076 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.49■□□□□ 0.23
CIITAP33076 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms