Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 PSME2P2-201ENST00000453033 700 ntBASIC18.72■□□□□ 0.59
RXRBP28702 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC18.72■□□□□ 0.59
RXRBP28702 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC18.72■□□□□ 0.59
RXRBP28702 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RXRBP28702 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC18.72■□□□□ 0.59
RXRBP28702 SMIM22-207ENST00000589721 822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RXRBP28702 COG6-212ENST00000630730 186 ntTSL 5 BASIC18.72■□□□□ 0.59
RXRBP28702 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RXRBP28702 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC18.72■□□□□ 0.59
RXRBP28702 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
RXRBP28702 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC18.72■□□□□ 0.59
RXRBP28702 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RXRBP28702 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC18.72■□□□□ 0.59
RXRBP28702 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RXRBP28702 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC18.72■□□□□ 0.59
RXRBP28702 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC18.72■□□□□ 0.59
RXRBP28702 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RXRBP28702 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC18.72■□□□□ 0.59
RXRBP28702 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RXRBP28702 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RXRBP28702 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC18.71■□□□□ 0.59
RXRBP28702 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
RXRBP28702 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC18.71■□□□□ 0.59
RXRBP28702 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.71■□□□□ 0.59
RXRBP28702 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC18.71■□□□□ 0.59
RXRBP28702 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 AC000078.1-201ENST00000420617 682 ntBASIC18.71■□□□□ 0.59
RXRBP28702 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC18.71■□□□□ 0.59
RXRBP28702 AC005921.2-201ENST00000574246 670 ntTSL 5 BASIC18.71■□□□□ 0.59
RXRBP28702 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC18.71■□□□□ 0.59
RXRBP28702 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.71■□□□□ 0.59
RXRBP28702 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC18.71■□□□□ 0.59
RXRBP28702 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC18.71■□□□□ 0.59
RXRBP28702 AC117503.4-201ENST00000623229 1418 ntBASIC18.71■□□□□ 0.59
RXRBP28702 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
RXRBP28702 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RXRBP28702 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.71■□□□□ 0.59
RXRBP28702 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
RXRBP28702 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC18.7■□□□□ 0.58
RXRBP28702 OR6D1P-203ENST00000641209 4860 ntBASIC18.7■□□□□ 0.58
RXRBP28702 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
RXRBP28702 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
RXRBP28702 LCE4A-201ENST00000335535 388 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
RXRBP28702 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 KRT18P33-201ENST00000398525 1043 ntBASIC18.7■□□□□ 0.58
RXRBP28702 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC18.7■□□□□ 0.58
RXRBP28702 OR2W2P-201ENST00000406313 909 ntBASIC18.7■□□□□ 0.58
RXRBP28702 SNORD88B-201ENST00000408454 91 ntBASIC18.7■□□□□ 0.58
RXRBP28702 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC18.7■□□□□ 0.58
RXRBP28702 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC18.7■□□□□ 0.58
RXRBP28702 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC18.7■□□□□ 0.58
RXRBP28702 RN7SL794P-201ENST00000469816 280 ntBASIC18.7■□□□□ 0.58
RXRBP28702 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
RXRBP28702 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC18.7■□□□□ 0.58
RXRBP28702 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC18.7■□□□□ 0.58
RXRBP28702 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC18.7■□□□□ 0.58
RXRBP28702 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC18.7■□□□□ 0.58
RXRBP28702 AL139317.2-201ENST00000556998 158 ntBASIC18.7■□□□□ 0.58
RXRBP28702 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
RXRBP28702 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC18.7■□□□□ 0.58
RXRBP28702 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC18.7■□□□□ 0.58
RXRBP28702 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC18.7■□□□□ 0.58
RXRBP28702 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC18.7■□□□□ 0.58
RXRBP28702 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
RXRBP28702 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
RXRBP28702 AL645608.8-201ENST00000606034 2086 ntBASIC18.7■□□□□ 0.58
RXRBP28702 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC18.7■□□□□ 0.58
RXRBP28702 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.7■□□□□ 0.58
RXRBP28702 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RXRBP28702 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC18.69■□□□□ 0.58
RXRBP28702 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms