Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 AL512306.1-201ENST00000432698 848 ntBASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 ERP29P1-201ENST00000442902 706 ntBASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 RPL18AP8-201ENST00000486071 528 ntBASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 AREG-202ENST00000502307 956 ntTSL 5 BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 AC138466.5-201ENST00000624002 808 ntBASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 USP4-203ENST00000415188 1454 ntTSL 3 BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 AC139712.1-201ENST00000378256 1875 ntBASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 LINC01815-202ENST00000641468 1409 ntBASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 PCDHGB8P-201ENST00000502926 1973 ntBASIC19.32■□□□□ 0.68
CSB-PGBD3P0DP91 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 DOC2GP-204ENST00000639052 2548 ntBASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 ST13P19-201ENST00000442505 1124 ntBASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 AC027237.1-201ENST00000560942 655 ntBASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 MIR4472-1-201ENST00000584349 80 ntBASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CSB-PGBD3P0DP91 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 AL022344.2-201ENST00000568976 968 ntBASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 LINC00554-201ENST00000564841 3011 ntBASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 TMBIM7P-203ENST00000641617 1718 ntBASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms