Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP4O75161 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP4O75161 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP4O75161 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP4O75161 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP4O75161 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP4O75161 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
NPHP4O75161 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.8
NPHP4O75161 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP4O75161 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP4O75161 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP4O75161 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC20.08■□□□□ 0.8
NPHP4O75161 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP4O75161 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC20.08■□□□□ 0.8
NPHP4O75161 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC20.08■□□□□ 0.8
NPHP4O75161 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
NPHP4O75161 HNRNPA1P25-201ENST00000422644 937 ntBASIC20.08■□□□□ 0.8
NPHP4O75161 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
NPHP4O75161 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC20.08■□□□□ 0.8
NPHP4O75161 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC20.08■□□□□ 0.8
NPHP4O75161 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC20.08■□□□□ 0.8
NPHP4O75161 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC20.08■□□□□ 0.8
NPHP4O75161 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC20.08■□□□□ 0.8
NPHP4O75161 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
NPHP4O75161 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC20.08■□□□□ 0.8
NPHP4O75161 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP4O75161 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP4O75161 MT3-202ENST00000561640 514 ntTSL 3 BASIC20.08■□□□□ 0.8
NPHP4O75161 AC005586.2-201ENST00000563946 837 ntBASIC20.08■□□□□ 0.8
NPHP4O75161 AC113385.2-201ENST00000614465 762 ntBASIC20.08■□□□□ 0.8
NPHP4O75161 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC20.08■□□□□ 0.8
NPHP4O75161 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP4O75161 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
NPHP4O75161 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP4O75161 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC20.07■□□□□ 0.8
NPHP4O75161 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP4O75161 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC20.07■□□□□ 0.8
NPHP4O75161 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
NPHP4O75161 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
NPHP4O75161 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP4O75161 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP4O75161 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP4O75161 SHMT1P1-201ENST00000419974 1312 ntBASIC20.07■□□□□ 0.8
NPHP4O75161 LINC00115-201ENST00000473798 1317 ntBASIC20.07■□□□□ 0.8
NPHP4O75161 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
NPHP4O75161 OR2W2P-201ENST00000406313 909 ntBASIC20.07■□□□□ 0.8
NPHP4O75161 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC20.07■□□□□ 0.8
NPHP4O75161 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC20.07■□□□□ 0.8
NPHP4O75161 SNRPCP15-201ENST00000424055 192 ntBASIC20.07■□□□□ 0.8
NPHP4O75161 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP4O75161 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP4O75161 AC090820.1-201ENST00000519722 591 ntBASIC20.07■□□□□ 0.8
NPHP4O75161 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC20.07■□□□□ 0.8
NPHP4O75161 RN7SL605P-201ENST00000577229 281 ntBASIC20.07■□□□□ 0.8
NPHP4O75161 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
NPHP4O75161 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC20.07■□□□□ 0.8
NPHP4O75161 NF1P11-201ENST00000621292 1282 ntBASIC20.07■□□□□ 0.8
NPHP4O75161 AC005865.2-202ENST00000635814 725 ntBASIC20.07■□□□□ 0.8
NPHP4O75161 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
NPHP4O75161 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP4O75161 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
NPHP4O75161 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP4O75161 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC20.06■□□□□ 0.8
NPHP4O75161 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC20.06■□□□□ 0.8
NPHP4O75161 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
NPHP4O75161 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC20.06■□□□□ 0.8
NPHP4O75161 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 AL161932.2-201ENST00000435436 679 ntBASIC20.06■□□□□ 0.8
NPHP4O75161 RPSAP12-201ENST00000435879 888 ntBASIC20.06■□□□□ 0.8
NPHP4O75161 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP4O75161 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
NPHP4O75161 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP4O75161 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
NPHP4O75161 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC20.06■□□□□ 0.8
NPHP4O75161 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP4O75161 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC20.06■□□□□ 0.8
NPHP4O75161 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP4O75161 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP4O75161 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC20.05■□□□□ 0.8
NPHP4O75161 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms