Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC11.94□□□□□ -0.5
HMGB3O15347 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
HMGB3O15347 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
HMGB3O15347 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC11.94□□□□□ -0.5
HMGB3O15347 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 CEP350-202ENST00000367607 13491 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC11.94□□□□□ -0.5
HMGB3O15347 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC11.94□□□□□ -0.5
HMGB3O15347 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC11.93□□□□□ -0.5
HMGB3O15347 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 AL118506.1-201ENST00000601296 3082 ntBASIC11.93□□□□□ -0.5
HMGB3O15347 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
HMGB3O15347 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC11.93□□□□□ -0.5
HMGB3O15347 OGFR-202ENST00000370461 4506 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
HMGB3O15347 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 AL139385.1-201ENST00000611744 3272 ntBASIC11.93□□□□□ -0.5
HMGB3O15347 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC11.93□□□□□ -0.5
HMGB3O15347 AL445209.1-201ENST00000607269 3491 ntBASIC11.93□□□□□ -0.5
HMGB3O15347 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
HMGB3O15347 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 FSD2-201ENST00000334574 6418 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 SCN1B-202ENST00000415950 4537 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
HMGB3O15347 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC11.93□□□□□ -0.5
HMGB3O15347 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC11.93□□□□□ -0.5
HMGB3O15347 AC112191.1-201ENST00000523689 701 ntBASIC11.93□□□□□ -0.5
HMGB3O15347 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
HMGB3O15347 SUOX-214ENST00000551841 906 ntTSL 3 BASIC11.93□□□□□ -0.5
HMGB3O15347 MAX-210ENST00000555419 765 ntTSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 AL135744.1-201ENST00000565098 629 ntBASIC11.93□□□□□ -0.5
HMGB3O15347 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC11.93□□□□□ -0.5
HMGB3O15347 AL121912.1-201ENST00000603683 238 ntBASIC11.93□□□□□ -0.5
HMGB3O15347 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 PRKN-208ENST00000610470 531 ntTSL 2 BASIC11.93□□□□□ -0.5
HMGB3O15347 PRKN-209ENST00000612485 225 ntTSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC11.93□□□□□ -0.5
HMGB3O15347 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC11.93□□□□□ -0.5
HMGB3O15347 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC11.93□□□□□ -0.5
HMGB3O15347 DIP2C-205ENST00000634311 4961 ntTSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
HMGB3O15347 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HMGB3O15347 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC11.93□□□□□ -0.5
HMGB3O15347 LILRP1-201ENST00000444199 1370 ntBASIC11.92□□□□□ -0.5
HMGB3O15347 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 AL354702.1-201ENST00000442006 1960 ntBASIC11.92□□□□□ -0.5
HMGB3O15347 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 VSTM4-202ENST00000332853 6392 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC11.92□□□□□ -0.5
HMGB3O15347 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 ICK-202ENST00000356971 6227 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC11.92□□□□□ -0.5
HMGB3O15347 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC11.92□□□□□ -0.5
HMGB3O15347 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms