Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 MEX3B-202ENST00000558133 4333 ntBASIC12.63□□□□□ -0.39
SDCBPO00560 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 TET3-201ENST00000305799 5174 ntTSL 5 BASIC12.63□□□□□ -0.39
SDCBPO00560 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
SDCBPO00560 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
SDCBPO00560 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
SDCBPO00560 COL6A4P2-202ENST00000504443 2753 ntBASIC12.63□□□□□ -0.39
SDCBPO00560 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC12.63□□□□□ -0.39
SDCBPO00560 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 MRPS18AP1-201ENST00000414458 589 ntBASIC12.63□□□□□ -0.39
SDCBPO00560 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC12.63□□□□□ -0.39
SDCBPO00560 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC12.63□□□□□ -0.39
SDCBPO00560 CYMP-203ENST00000474680 1263 ntBASIC12.63□□□□□ -0.39
SDCBPO00560 RPL13AP25-201ENST00000484130 612 ntBASIC12.63□□□□□ -0.39
SDCBPO00560 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC12.63□□□□□ -0.39
SDCBPO00560 AQP6-203ENST00000551733 849 ntTSL 3 BASIC12.63□□□□□ -0.39
SDCBPO00560 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
SDCBPO00560 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
SDCBPO00560 AL391069.4-201ENST00000609583 481 ntBASIC12.63□□□□□ -0.39
SDCBPO00560 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC12.63□□□□□ -0.39
SDCBPO00560 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
SDCBPO00560 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
SDCBPO00560 CICP16-201ENST00000502609 2813 ntBASIC12.63□□□□□ -0.39
SDCBPO00560 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC12.63□□□□□ -0.39
SDCBPO00560 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
SDCBPO00560 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
SDCBPO00560 KRT8P22-201ENST00000562317 1415 ntBASIC12.62□□□□□ -0.39
SDCBPO00560 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC12.62□□□□□ -0.39
SDCBPO00560 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC12.62□□□□□ -0.39
SDCBPO00560 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
SDCBPO00560 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC12.62□□□□□ -0.39
SDCBPO00560 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
SDCBPO00560 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
SDCBPO00560 USP3-204ENST00000540797 5474 ntTSL 2 BASIC12.62□□□□□ -0.39
SDCBPO00560 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC12.62□□□□□ -0.39
SDCBPO00560 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
SDCBPO00560 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC12.62□□□□□ -0.39
SDCBPO00560 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC12.62□□□□□ -0.39
SDCBPO00560 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC12.62□□□□□ -0.39
SDCBPO00560 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC12.62□□□□□ -0.39
SDCBPO00560 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC12.62□□□□□ -0.39
SDCBPO00560 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC12.62□□□□□ -0.39
SDCBPO00560 RN7SL399P-201ENST00000471648 279 ntBASIC12.62□□□□□ -0.39
SDCBPO00560 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC12.62□□□□□ -0.39
SDCBPO00560 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC12.62□□□□□ -0.39
SDCBPO00560 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC12.62□□□□□ -0.39
SDCBPO00560 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
SDCBPO00560 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC12.62□□□□□ -0.39
SDCBPO00560 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms