Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.78■□□□□ 0.12
FOXN3O00409 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.78■□□□□ 0.12
FOXN3O00409 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 AL354989.2-201ENST00000435838 1540 ntBASIC15.78■□□□□ 0.12
FOXN3O00409 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.78■□□□□ 0.12
FOXN3O00409 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
FOXN3O00409 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
FOXN3O00409 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.77■□□□□ 0.12
FOXN3O00409 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC15.77■□□□□ 0.12
FOXN3O00409 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.12
FOXN3O00409 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
FOXN3O00409 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.77■□□□□ 0.12
FOXN3O00409 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC15.77■□□□□ 0.12
FOXN3O00409 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
FOXN3O00409 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
FOXN3O00409 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.77■□□□□ 0.12
FOXN3O00409 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.77■□□□□ 0.12
FOXN3O00409 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.77■□□□□ 0.12
FOXN3O00409 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
FOXN3O00409 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
FOXN3O00409 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
FOXN3O00409 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.77■□□□□ 0.12
FOXN3O00409 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.77■□□□□ 0.12
FOXN3O00409 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.77■□□□□ 0.12
FOXN3O00409 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.77■□□□□ 0.12
FOXN3O00409 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.77■□□□□ 0.12
FOXN3O00409 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.77■□□□□ 0.12
FOXN3O00409 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.77■□□□□ 0.12
FOXN3O00409 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.77■□□□□ 0.12
FOXN3O00409 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXN3O00409 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
FOXN3O00409 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
FOXN3O00409 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXN3O00409 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
FOXN3O00409 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXN3O00409 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
FOXN3O00409 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
FOXN3O00409 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXN3O00409 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXN3O00409 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXN3O00409 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXN3O00409 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXN3O00409 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
FOXN3O00409 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.11
FOXN3O00409 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
FOXN3O00409 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
FOXN3O00409 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
FOXN3O00409 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXN3O00409 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
FOXN3O00409 KRT8P28-201ENST00000433288 1390 ntBASIC15.76■□□□□ 0.11
FOXN3O00409 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
FOXN3O00409 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
FOXN3O00409 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.76■□□□□ 0.11
FOXN3O00409 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXN3O00409 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXN3O00409 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXN3O00409 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
FOXN3O00409 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
FOXN3O00409 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.76■□□□□ 0.11
FOXN3O00409 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXN3O00409 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.76■□□□□ 0.11
FOXN3O00409 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
FOXN3O00409 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
FOXN3O00409 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXN3O00409 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXN3O00409 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXN3O00409 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
FOXN3O00409 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.76■□□□□ 0.11
FOXN3O00409 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.76■□□□□ 0.11
FOXN3O00409 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.76■□□□□ 0.11
FOXN3O00409 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.76■□□□□ 0.11
FOXN3O00409 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
FOXN3O00409 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.76■□□□□ 0.11
FOXN3O00409 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms