Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 AL360270.3-201ENST00000609118 1348 ntBASIC14.41□□□□□ -0.1
VPS4AQ9UN37 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 SLC25A24P2-201ENST00000415059 510 ntBASIC14.41□□□□□ -0.1
VPS4AQ9UN37 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 AC068587.3-201ENST00000526613 355 ntBASIC14.41□□□□□ -0.1
VPS4AQ9UN37 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 ENPP7P5-201ENST00000541031 1031 ntBASIC14.41□□□□□ -0.1
VPS4AQ9UN37 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS4AQ9UN37 AL359183.1-201ENST00000623796 2132 ntBASIC14.41□□□□□ -0.1
VPS4AQ9UN37 BX640514.1-201ENST00000583223 1918 ntBASIC14.41□□□□□ -0.1
VPS4AQ9UN37 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 RHOQP1-201ENST00000555758 579 ntBASIC14.4□□□□□ -0.1
VPS4AQ9UN37 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 RN7SL560P-201ENST00000577943 264 ntBASIC14.4□□□□□ -0.1
VPS4AQ9UN37 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 RPSAP52-203ENST00000622976 1023 ntBASIC14.4□□□□□ -0.1
VPS4AQ9UN37 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms