Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 TCAM1P-207ENST00000485295 1537 ntBASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 MEP1AP4-201ENST00000423244 1087 ntBASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 CRB3P1-201ENST00000449338 276 ntBASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 AC004233.3-201ENST00000607794 1269 ntBASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 AC099568.2-201ENST00000609194 695 ntBASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
AMBRA1Q9C0C7 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 AL391825.1-201ENST00000457671 1364 ntBASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 Z82170.1-201ENST00000625081 3192 ntBASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 VDAC1P7-201ENST00000462417 847 ntBASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 RARRES2P5-201ENST00000564013 466 ntBASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 DUX4L47-201ENST00000566374 394 ntBASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 AC036164.1-201ENST00000570544 333 ntBASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 SPDYE22P-201ENST00000582158 798 ntBASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 PRSS30P-206ENST00000641773 873 ntBASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.86□□□□□ -0.19
AMBRA1Q9C0C7 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms