Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 AC026434.2-201ENST00000506094 1078 ntBASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 AC092865.5-201ENST00000545435 363 ntBASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 AC093813.1-201ENST00000605066 256 ntBASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 HSPA8P5-201ENST00000456928 2069 ntBASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 AC011498.7-201ENST00000624986 2027 ntBASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 AC003102.2-201ENST00000589195 1469 ntBASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 AC022616.1-201ENST00000518688 554 ntBASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28BQ9BUN5 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
CCDC28BQ9BUN5 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms