Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP3Q96DZ5 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP3Q96DZ5 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP3Q96DZ5 AC117489.1-201ENST00000625169 3217 ntBASIC14.39□□□□□ -0.11
CLIP3Q96DZ5 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP3Q96DZ5 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CLIP3Q96DZ5 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CLIP3Q96DZ5 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP3Q96DZ5 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CLIP3Q96DZ5 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP3Q96DZ5 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 AC020907.1-201ENST00000616460 1350 ntBASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 AC041040.2-201ENST00000622926 2899 ntBASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 MTX1P1-201ENST00000440904 838 ntBASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 COX5BP1-201ENST00000507622 393 ntBASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 ACR-203ENST00000529621 708 ntTSL 5 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 EEF1DP1-201ENST00000585891 896 ntBASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 AC112693.3-201ENST00000624819 1983 ntBASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP3Q96DZ5 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 AC006486.2-201ENST00000624246 2199 ntBASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 GOLGA2P4-201ENST00000441462 777 ntBASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 CNN2P10-201ENST00000443067 918 ntBASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 AC099548.2-209ENST00000480264 625 ntBASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 OR10B1P-201ENST00000601666 907 ntBASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 MIR6787-201ENST00000616675 61 ntBASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP3Q96DZ5 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms