Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH6P52701 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC19.99■□□□□ 0.79
MSH6P52701 RN7SL147P-201ENST00000487345 298 ntBASIC19.99■□□□□ 0.79
MSH6P52701 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC19.99■□□□□ 0.79
MSH6P52701 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC19.99■□□□□ 0.79
MSH6P52701 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC19.99■□□□□ 0.79
MSH6P52701 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH6P52701 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC19.99■□□□□ 0.79
MSH6P52701 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC19.99■□□□□ 0.79
MSH6P52701 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC19.99■□□□□ 0.79
MSH6P52701 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
MSH6P52701 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC19.99■□□□□ 0.79
MSH6P52701 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC19.99■□□□□ 0.79
MSH6P52701 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC19.99■□□□□ 0.79
MSH6P52701 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC19.99■□□□□ 0.79
MSH6P52701 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH6P52701 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
MSH6P52701 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.99■□□□□ 0.79
MSH6P52701 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
MSH6P52701 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC19.99■□□□□ 0.79
MSH6P52701 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC19.99■□□□□ 0.79
MSH6P52701 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH6P52701 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
MSH6P52701 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH6P52701 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC19.98■□□□□ 0.79
MSH6P52701 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC19.98■□□□□ 0.79
MSH6P52701 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
MSH6P52701 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
MSH6P52701 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC19.98■□□□□ 0.79
MSH6P52701 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC19.98■□□□□ 0.79
MSH6P52701 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC19.98■□□□□ 0.79
MSH6P52701 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC19.98■□□□□ 0.79
MSH6P52701 AP005264.5-201ENST00000590066 467 ntBASIC19.98■□□□□ 0.79
MSH6P52701 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC19.98■□□□□ 0.79
MSH6P52701 AL359091.4-201ENST00000610052 409 ntBASIC19.98■□□□□ 0.79
MSH6P52701 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 AC090386.2-201ENST00000623010 1039 ntBASIC19.98■□□□□ 0.79
MSH6P52701 AC110057.1-201ENST00000636031 898 ntBASIC19.98■□□□□ 0.79
MSH6P52701 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 SSR4P1-203ENST00000599569 2260 ntBASIC19.98■□□□□ 0.79
MSH6P52701 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
MSH6P52701 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
MSH6P52701 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
MSH6P52701 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC19.98■□□□□ 0.79
MSH6P52701 AC092135.3-201ENST00000624151 1846 ntBASIC19.98■□□□□ 0.79
MSH6P52701 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
MSH6P52701 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH6P52701 BAX-205ENST00000391871 687 ntTSL 5 BASIC19.97■□□□□ 0.79
MSH6P52701 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
MSH6P52701 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC19.97■□□□□ 0.79
MSH6P52701 GRPEL2P1-201ENST00000453145 339 ntBASIC19.97■□□□□ 0.79
MSH6P52701 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 AC092896.1-201ENST00000465850 380 ntBASIC19.97■□□□□ 0.79
MSH6P52701 RN7SL375P-201ENST00000492442 298 ntBASIC19.97■□□□□ 0.79
MSH6P52701 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC19.97■□□□□ 0.79
MSH6P52701 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC19.97■□□□□ 0.79
MSH6P52701 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC19.97■□□□□ 0.79
MSH6P52701 HNRNPA1P16-201ENST00000575692 955 ntBASIC19.97■□□□□ 0.79
MSH6P52701 NT5C-204ENST00000578337 582 ntTSL 2 BASIC19.97■□□□□ 0.79
MSH6P52701 PHF23-213ENST00000613632 850 ntTSL 5 BASIC19.97■□□□□ 0.79
MSH6P52701 CR392039.1-201ENST00000623217 204 ntBASIC19.97■□□□□ 0.79
MSH6P52701 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC19.97■□□□□ 0.79
MSH6P52701 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC19.97■□□□□ 0.79
MSH6P52701 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 AC139712.1-201ENST00000378256 1875 ntBASIC19.97■□□□□ 0.79
MSH6P52701 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
MSH6P52701 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC19.97■□□□□ 0.79
MSH6P52701 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC19.97■□□□□ 0.79
MSH6P52701 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.97■□□□□ 0.79
MSH6P52701 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH6P52701 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.96■□□□□ 0.79
MSH6P52701 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC19.96■□□□□ 0.79
MSH6P52701 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms