Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL136309.1-201ENST00000403917 691 ntBASIC13.58□□□□□ -0.24
MSX1P28360 SLC25A24P2-201ENST00000415059 510 ntBASIC13.58□□□□□ -0.24
MSX1P28360 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC13.58□□□□□ -0.24
MSX1P28360 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 AL591846.1-201ENST00000451736 433 ntBASIC13.58□□□□□ -0.24
MSX1P28360 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.58□□□□□ -0.24
MSX1P28360 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC13.58□□□□□ -0.24
MSX1P28360 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
MSX1P28360 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.58□□□□□ -0.24
MSX1P28360 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.58□□□□□ -0.24
MSX1P28360 RHOQP1-201ENST00000555758 579 ntBASIC13.58□□□□□ -0.24
MSX1P28360 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.58□□□□□ -0.24
MSX1P28360 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.58□□□□□ -0.24
MSX1P28360 MIR4741-201ENST00000579822 90 ntBASIC13.58□□□□□ -0.24
MSX1P28360 AP001542.1-201ENST00000591314 200 ntBASIC13.58□□□□□ -0.24
MSX1P28360 AC008825.2-201ENST00000603374 718 ntBASIC13.58□□□□□ -0.24
MSX1P28360 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 AC092723.2-201ENST00000624955 793 ntBASIC13.58□□□□□ -0.24
MSX1P28360 AC244452.3-201ENST00000636814 210 ntBASIC13.58□□□□□ -0.24
MSX1P28360 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
MSX1P28360 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.58□□□□□ -0.24
MSX1P28360 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.58□□□□□ -0.24
MSX1P28360 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
MSX1P28360 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.58□□□□□ -0.24
MSX1P28360 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
MSX1P28360 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.58□□□□□ -0.24
MSX1P28360 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
MSX1P28360 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MSX1P28360 AC092135.3-201ENST00000624151 1846 ntBASIC13.57□□□□□ -0.24
MSX1P28360 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.57□□□□□ -0.24
MSX1P28360 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.57□□□□□ -0.24
MSX1P28360 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.57□□□□□ -0.24
MSX1P28360 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
MSX1P28360 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.57□□□□□ -0.24
MSX1P28360 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.57□□□□□ -0.24
MSX1P28360 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.57□□□□□ -0.24
MSX1P28360 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.57□□□□□ -0.24
MSX1P28360 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.57□□□□□ -0.24
MSX1P28360 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.57□□□□□ -0.24
MSX1P28360 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.57□□□□□ -0.24
MSX1P28360 AC018529.2-202ENST00000611482 3087 ntBASIC13.57□□□□□ -0.24
MSX1P28360 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC13.57□□□□□ -0.24
MSX1P28360 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.57□□□□□ -0.24
MSX1P28360 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
MSX1P28360 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.57□□□□□ -0.24
MSX1P28360 MTX1P1-201ENST00000440904 838 ntBASIC13.57□□□□□ -0.24
MSX1P28360 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.57□□□□□ -0.24
MSX1P28360 HOMER2P2-201ENST00000451621 847 ntBASIC13.57□□□□□ -0.24
MSX1P28360 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC13.57□□□□□ -0.24
MSX1P28360 IGHJ2P-201ENST00000454480 60 ntBASIC13.57□□□□□ -0.24
MSX1P28360 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC13.57□□□□□ -0.24
MSX1P28360 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.57□□□□□ -0.24
MSX1P28360 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC13.57□□□□□ -0.24
MSX1P28360 AC106872.11-201ENST00000605838 421 ntBASIC13.57□□□□□ -0.24
MSX1P28360 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC13.57□□□□□ -0.24
MSX1P28360 AC005695.3-201ENST00000614522 232 ntBASIC13.57□□□□□ -0.24
MSX1P28360 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.57□□□□□ -0.24
MSX1P28360 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.57□□□□□ -0.24
MSX1P28360 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.57□□□□□ -0.24
MSX1P28360 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.57□□□□□ -0.24
MSX1P28360 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
MSX1P28360 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MSX1P28360 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC13.57□□□□□ -0.24
MSX1P28360 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms