Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC18.62■□□□□ 0.57
NPHP1O15259 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC18.62■□□□□ 0.57
NPHP1O15259 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC18.62■□□□□ 0.57
NPHP1O15259 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC18.62■□□□□ 0.57
NPHP1O15259 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC18.62■□□□□ 0.57
NPHP1O15259 AC135983.4-201ENST00000564116 1262 ntBASIC18.62■□□□□ 0.57
NPHP1O15259 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC18.62■□□□□ 0.57
NPHP1O15259 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
NPHP1O15259 AC051619.9-201ENST00000623237 597 ntBASIC18.62■□□□□ 0.57
NPHP1O15259 AL365209.1-201ENST00000624418 6473 ntBASIC18.62■□□□□ 0.57
NPHP1O15259 AC074138.1-201ENST00000611182 1303 ntBASIC18.62■□□□□ 0.57
NPHP1O15259 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC18.62■□□□□ 0.57
NPHP1O15259 FAM90A2P-201ENST00000511144 1395 ntBASIC18.62■□□□□ 0.57
NPHP1O15259 FAM90A25P-201ENST00000528404 1395 ntBASIC18.62■□□□□ 0.57
NPHP1O15259 CAP2P1-201ENST00000557743 1390 ntBASIC18.62■□□□□ 0.57
NPHP1O15259 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
NPHP1O15259 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC18.62■□□□□ 0.57
NPHP1O15259 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC18.62■□□□□ 0.57
NPHP1O15259 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
NPHP1O15259 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.62■□□□□ 0.57
NPHP1O15259 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.62■□□□□ 0.57
NPHP1O15259 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC18.62■□□□□ 0.57
NPHP1O15259 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC18.62■□□□□ 0.57
NPHP1O15259 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.62■□□□□ 0.57
NPHP1O15259 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.62■□□□□ 0.57
NPHP1O15259 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 AC092053.3-201ENST00000641308 4975 ntBASIC18.62■□□□□ 0.57
NPHP1O15259 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
NPHP1O15259 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC18.61■□□□□ 0.57
NPHP1O15259 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 LINC02228-204ENST00000642115 2962 ntBASIC18.61■□□□□ 0.57
NPHP1O15259 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
NPHP1O15259 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.61■□□□□ 0.57
NPHP1O15259 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 STK26-204ENST00000481105 1835 ntTSL 2 BASIC18.61■□□□□ 0.57
NPHP1O15259 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 SALL4P5-201ENST00000419001 1760 ntBASIC18.61■□□□□ 0.57
NPHP1O15259 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC18.61■□□□□ 0.57
NPHP1O15259 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 RAN-210ENST00000541630 1475 ntTSL 2 BASIC18.61■□□□□ 0.57
NPHP1O15259 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 FRMPD2B-201ENST00000431305 1347 ntBASIC18.61■□□□□ 0.57
NPHP1O15259 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 NCR3-202ENST00000376071 541 ntTSL 5 BASIC18.61■□□□□ 0.57
NPHP1O15259 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC18.61■□□□□ 0.57
NPHP1O15259 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
NPHP1O15259 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC18.61■□□□□ 0.57
NPHP1O15259 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC18.61■□□□□ 0.57
NPHP1O15259 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC18.61■□□□□ 0.57
NPHP1O15259 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC18.61■□□□□ 0.57
NPHP1O15259 RN7SL67P-201ENST00000492147 296 ntBASIC18.61■□□□□ 0.57
NPHP1O15259 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
NPHP1O15259 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
NPHP1O15259 NPM1P43-201ENST00000558669 786 ntBASIC18.61■□□□□ 0.57
NPHP1O15259 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC18.61■□□□□ 0.57
NPHP1O15259 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC18.61■□□□□ 0.57
NPHP1O15259 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 AL109837.1-201ENST00000603272 613 ntBASIC18.61■□□□□ 0.57
NPHP1O15259 AC092171.5-201ENST00000608012 942 ntBASIC18.61■□□□□ 0.57
NPHP1O15259 AC027601.3-201ENST00000622907 509 ntBASIC18.61■□□□□ 0.57
NPHP1O15259 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC18.61■□□□□ 0.57
NPHP1O15259 HLA-C-210ENST00000640219 976 ntBASIC18.61■□□□□ 0.57
NPHP1O15259 Z98259.2-201ENST00000641583 609 ntBASIC18.61■□□□□ 0.57
NPHP1O15259 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
NPHP1O15259 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
NPHP1O15259 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC18.61■□□□□ 0.57
NPHP1O15259 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPHP1O15259 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC18.6■□□□□ 0.57
NPHP1O15259 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.6■□□□□ 0.57
NPHP1O15259 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
NPHP1O15259 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
NPHP1O15259 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC18.6■□□□□ 0.57
NPHP1O15259 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms