Protein–RNA interactions for Protein: A2RUB6

CCDC66, Coiled-coil domain-containing protein 66, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66A2RUB6 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC66A2RUB6 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC66A2RUB6 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC66A2RUB6 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 RN7SL618P-201ENST00000477850 296 ntBASIC16.13■□□□□ 0.17
CCDC66A2RUB6 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 TEX28P1-201ENST00000613479 1221 ntBASIC16.13■□□□□ 0.17
CCDC66A2RUB6 TEX28P2-201ENST00000617764 1221 ntBASIC16.13■□□□□ 0.17
CCDC66A2RUB6 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC66A2RUB6 AC007787.1-201ENST00000588095 1583 ntBASIC16.13■□□□□ 0.17
CCDC66A2RUB6 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 AC010336.2-201ENST00000564226 506 ntBASIC16.12■□□□□ 0.17
CCDC66A2RUB6 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 AC051619.7-201ENST00000568314 623 ntBASIC16.12■□□□□ 0.17
CCDC66A2RUB6 AP001160.2-201ENST00000596071 487 ntBASIC16.12■□□□□ 0.17
CCDC66A2RUB6 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 SPDYE12P-201ENST00000618416 771 ntBASIC16.12■□□□□ 0.17
CCDC66A2RUB6 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 MIR193BHG-211ENST00000641433 5365 ntBASIC16.12■□□□□ 0.17
CCDC66A2RUB6 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC66A2RUB6 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC66A2RUB6 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC66A2RUB6 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC16.11■□□□□ 0.17
CCDC66A2RUB6 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CCDC66A2RUB6 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
CCDC66A2RUB6 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CCDC66A2RUB6 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC66A2RUB6 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC16.11■□□□□ 0.17
CCDC66A2RUB6 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC66A2RUB6 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC66A2RUB6 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC66A2RUB6 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms